Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CYP4Z1 (cytochrome P450 family 4 subfamily Z member 1)

Identity

Other namesCYP4A20
HGNC (Hugo) CYP4Z1
LocusID (NCBI) 199974
Atlas_Id 45560
Location 1p33  [Link to chromosome band 1p33]
Location_base_pair Starts at 47533160 and ends at 47583992 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CYP4Z1   20583
Cards
Entrez_Gene (NCBI)CYP4Z1  199974  cytochrome P450 family 4 subfamily Z member 1
AliasesCYP4A20
GeneCards (Weizmann)CYP4Z1
Ensembl hg19 (Hinxton)ENSG00000186160 [Gene_View]  chr1:47533160-47583992 [Contig_View]  CYP4Z1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000186160 [Gene_View]  chr1:47533160-47583992 [Contig_View]  CYP4Z1 [Vega]
ICGC DataPortalENSG00000186160
TCGA cBioPortalCYP4Z1
AceView (NCBI)CYP4Z1
Genatlas (Paris)CYP4Z1
WikiGenes199974
SOURCE (Princeton)CYP4Z1
Genomic and cartography
GoldenPath hg19 (UCSC)CYP4Z1  -     chr1:47533160-47583992 +  1p33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CYP4Z1  -     1p33   [Description]    (hg38-Dec_2013)
EnsemblCYP4Z1 - 1p33 [CytoView hg19]  CYP4Z1 - 1p33 [CytoView hg38]
Mapping of homologs : NCBICYP4Z1 [Mapview hg19]  CYP4Z1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK292175 AY262056 AY358631 BC140382 BC146466
RefSeq transcript (Entrez)NM_178134
RefSeq genomic (Entrez)NC_000001 NC_018912 NG_007967 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)CYP4Z1
Cluster EST : UnigeneHs.176588 [ NCBI ]
CGAP (NCI)Hs.176588
Alternative Splicing GalleryENSG00000186160
Gene ExpressionCYP4Z1 [ NCBI-GEO ]   CYP4Z1 [ EBI - ARRAY_EXPRESS ]   CYP4Z1 [ SEEK ]   CYP4Z1 [ MEM ]
Gene Expression Viewer (FireBrowse)CYP4Z1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)199974
GTEX Portal (Tissue expression)CYP4Z1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86W10 (Uniprot)
NextProtQ86W10  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86W10
Splice isoforms : SwissVarQ86W10 (Swissvar)
Catalytic activity : Enzyme1.14.14.1 [ Enzyme-Expasy ]   1.14.14.11.14.14.1 [ IntEnz-EBI ]   1.14.14.1 [ BRENDA ]   1.14.14.1 [ KEGG ]   
PhosPhoSitePlusQ86W10
Domaine pattern : Prosite (Expaxy)CYTOCHROME_P450 (PS00086)   
Domains : Interpro (EBI)Cyt_P450    Cyt_P450_CS    Cyt_P450_E_grp-I   
Domain families : Pfam (Sanger)p450 (PF00067)   
Domain families : Pfam (NCBI)pfam00067   
DMDM Disease mutations199974
Blocks (Seattle)CYP4Z1
SuperfamilyQ86W10
Human Protein AtlasENSG00000186160
Peptide AtlasQ86W10
HPRD13111
IPIIPI00384350   
Protein Interaction databases
DIP (DOE-UCLA)Q86W10
IntAct (EBI)Q86W10
FunCoupENSG00000186160
BioGRIDCYP4Z1
STRING (EMBL)CYP4Z1
ZODIACCYP4Z1
Ontologies - Pathways
QuickGOQ86W10
Ontology : AmiGOiron ion binding  endoplasmic reticulum membrane  integral component of membrane  heme binding  oxidation-reduction process  aromatase activity  
Ontology : EGO-EBIiron ion binding  endoplasmic reticulum membrane  integral component of membrane  heme binding  oxidation-reduction process  aromatase activity  
NDEx Network
Atlas of Cancer Signalling NetworkCYP4Z1
Wikipedia pathwaysCYP4Z1
Orthology - Evolution
OrthoDB199974
GeneTree (enSembl)ENSG00000186160
Phylogenetic Trees/Animal Genes : TreeFamCYP4Z1
Homologs : HomoloGeneCYP4Z1
Homology/Alignments : Family Browser (UCSC)CYP4Z1
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerCYP4Z1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CYP4Z1
dbVarCYP4Z1
ClinVarCYP4Z1
1000_GenomesCYP4Z1 
Exome Variant ServerCYP4Z1
ExAC (Exome Aggregation Consortium)CYP4Z1 (select the gene name)
Genetic variants : HAPMAP199974
Genomic Variants (DGV)CYP4Z1 [DGVbeta]
Mutations
ICGC Data PortalCYP4Z1 
TCGA Data PortalCYP4Z1 
Broad Tumor PortalCYP4Z1
OASIS PortalCYP4Z1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCYP4Z1 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CYP4Z1
DgiDB (Drug Gene Interaction Database)CYP4Z1
DoCM (Curated mutations)CYP4Z1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CYP4Z1 (select a term)
intoGenCYP4Z1
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)1:47533160-47583992  ENSG00000186160
CONAN: Copy Number AnalysisCYP4Z1 
Mutations and Diseases : HGMDCYP4Z1
OMIM
MedgenCYP4Z1
Genetic Testing Registry CYP4Z1
NextProtQ86W10 [Medical]
TSGene199974
GENETestsCYP4Z1
Huge Navigator CYP4Z1 [HugePedia]
snp3D : Map Gene to Disease199974
BioCentury BCIQCYP4Z1
ClinGenCYP4Z1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD199974
Chemical/Pharm GKB GenePA134941057
Clinical trialCYP4Z1
Miscellaneous
canSAR (ICR)CYP4Z1 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCYP4Z1
EVEXCYP4Z1
GoPubMedCYP4Z1
iHOPCYP4Z1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 9 19:32:41 CEST 2016

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