Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CYTH1 (cytohesin 1)

Identity

Other namesB2-1
CYTOHESIN-1
D17S811E
PSCD1
SEC7
HGNC (Hugo) CYTH1
LocusID (NCBI) 9267
Location 17q25.3
Location_base_pair Starts at 76670130 and ends at 76778376 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CYTH1   9501
Entrez_Gene (NCBI)CYTH1  9267  cytohesin 1
Cards
GeneCards (Weizmann)CYTH1
Ensembl (Hinxton)ENSG00000108669 [Gene_View]  chr17:76670130-76778376 [Contig_View]  CYTH1 [Vega]
AceView (NCBI)CYTH1
Genatlas (Paris)CYTH1
SOURCE (Stanford)NM_004762 NM_017456
Genomic and cartography
GoldenPath (UCSC)CYTH1  -  17q25.3   chr17:76670130-76778376 -  17q25.3   [Description]    (hg19-Feb_2009)
EnsemblCYTH1 - 17q25.3 [CytoView]
Mapping of homologs : NCBICYTH1 [Mapview]
OMIM182115   
Gene and transcription
Genbank (Entrez)AF054997 AK091369 AK123894 AK293894 AK296914
RefSeq transcript (SRS)NM_004762 NM_017456
RefSeq transcript (Entrez)NM_004762 NM_017456
RefSeq genomic (SRS)AC_000149 NC_000017 NC_018928 NT_010783 NW_001838455 NW_004078092
RefSeq genomic (Entrez)AC_000149 NC_000017 NC_018928 NT_010783 NW_001838455 NW_004078092
Consensus coding sequences : CCDS (NCBI)CYTH1
Cluster EST : UnigeneHs.191215 [ SRS ] Hs.191215 [ NCBI ]
CGAP (NCI)Hs.191215
Alternative Splicing : Fast-db (Paris)GSHG0013778
Alternative Splicing GalleryENSG00000108669
Gene ExpressionCYTH1 [ NCBI-GEO ]   CYTH1 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15438 (SRS) Q15438 (Uniprot)
NextProtQ15438
With graphics : InterProQ15438
Splice isoforms : SwissVarQ15438(Swissvar)
Domaine pattern : Prosite (SRS)PH_DOMAIN (PS50003)    SEC7 (PS50190)   
Domaine pattern : Prosite (Expaxy)PH_DOMAIN (PS50003)    SEC7 (PS50190)   
Domains : Interpro (SRS)PH_like_dom    Pleckstrin_homology    Sec7    SEC7_alpha_orthog   
Domains : Interpro (EBI)PH_like_dom    Pleckstrin_homology    Sec7    SEC7_alpha_orthog   
Related proteins : CluSTrQ15438
Domain families : Pfam (SRS)PH (PF00169)    Sec7 (PF01369)   
Domain families : Pfam (Sanger)PH (PF00169)    Sec7 (PF01369)   
Domain families : Pfam (NCBI)pfam00169    pfam01369   
Domain families : Smart (EMBL)PH (SM00233)  Sec7 (SM00222)  
DMDM9267
Blocks (Seattle)Q15438
PDB (SRS)1BC9   
PDB (PDBSum)1BC9   
PDB (IMB)1BC9   
PDB (RSDB)1BC9   
Human Protein AtlasENSG00000108669
HPRD01630
IPIIPI00478608   IPI00328228   IPI00936565   IPI01015548   IPI00852664   IPI00852732   IPI00853357   
Protein Interaction databases
DIP (DOE-UCLA)Q15438
IntAct (EBI)Q15438
FunCoupENSG00000108669
REACTOMECYTH1
Protein Interaction Database9267
BioGRIDCYTH1
InParanoidQ15438
Interologous Interaction database Q15438
IntegromeDBCYTH1
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)CYTH1
SNP (GeneSNP Utah)CYTH1
SNP : HGBaseCYTH1
Genetic variants : HAPMAPCYTH1
Somatic Mutations in Cancer : COSMICCYTH1 
CONAN: Copy Number AnalysisCYTH1 
Mutations and Diseases : HGMDCYTH1
OMIM182115   
GENETests182115   
Disease Genetic AssociationCYTH1
Huge Navigator CYTH1 [HugePedia]  CYTH1 [HugeCancerGEM]
Genomic VariantsCYTH1  CYTH1 [DGVbeta]
snp3D : Map Gene to Disease9267
General knowledge
Homologs : HomoloGeneCYTH1
Homology/Alignments : Family Browser (UCSC)CYTH1
Phylogenetic Trees/Animal Genes : TreeFamCYTH1
Chemical/Protein Interactions : CTD9267
Chemical/Pharm GKB GenePA164718528
Clinical trialCYTH1
Cancer Resource (Charite)ENSG00000108669
Ontology : AmiGOARF guanyl-nucleotide exchange factor activity  protein binding  phospholipid binding  cytoplasm  trans-Golgi network  plasma membrane  tight junction  vesicle-mediated transport  regulation of cell adhesion  regulation of ARF protein signal transduction  establishment of epithelial cell polarity  
Ontology : EGO-EBIARF guanyl-nucleotide exchange factor activity  protein binding  phospholipid binding  cytoplasm  trans-Golgi network  plasma membrane  tight junction  vesicle-mediated transport  regulation of cell adhesion  regulation of ARF protein signal transduction  establishment of epithelial cell polarity  
Pathways : BIOCARTAADP-Ribosylation Factor [Genes]   
Other databases
Probes
Litterature
PubMed35 Pubmed reference(s) in Entrez
PubGeneCYTH1
iHOPCYTH1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:21:22 CEST 2013
Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.