Atlas of Genetics and Cytogenetics in Oncology and Haematology

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D2HGDH (D-2-hydroxyglutarate dehydrogenase)

Identity

Alias_symbol (synonym)MGC25181
D2HGD
FLJ42195
Other alias
HGNC (Hugo) D2HGDH
LocusID (NCBI) 728294
Atlas_Id 52271
Location 2q37.3  [Link to chromosome band 2q37]
Location_base_pair Starts at 241734579 and ends at 241768816 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
D2HGDH (2q37.3) / GAL3ST2 (2q37.3)D2HGDH (2q37.3) / HDGFRP2 (19p13.3)RHBDD3 (22q12.2) / D2HGDH (2q37.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)D2HGDH   28358
Cards
Entrez_Gene (NCBI)D2HGDH  728294  D-2-hydroxyglutarate dehydrogenase
AliasesD2HGD
GeneCards (Weizmann)D2HGDH
Ensembl hg19 (Hinxton)ENSG00000180902 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000180902 [Gene_View]  ENSG00000180902 [Sequence]  chr2:241734579-241768816 [Contig_View]  D2HGDH [Vega]
ICGC DataPortalENSG00000180902
TCGA cBioPortalD2HGDH
AceView (NCBI)D2HGDH
Genatlas (Paris)D2HGDH
WikiGenes728294
SOURCE (Princeton)D2HGDH
Genetics Home Reference (NIH)D2HGDH
Genomic and cartography
GoldenPath hg38 (UCSC)D2HGDH  -     chr2:241734579-241768816 +  2q37.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)D2HGDH  -     2q37.3   [Description]    (hg19-Feb_2009)
GoldenPathD2HGDH - 2q37.3 [CytoView hg19]  D2HGDH - 2q37.3 [CytoView hg38]
ImmunoBaseENSG00000180902
Mapping of homologs : NCBID2HGDH [Mapview hg19]  D2HGDH [Mapview hg38]
OMIM600721   609186   
Gene and transcription
Genbank (Entrez)AF318334 AK027102 AK055846 AK091725 AK094149
RefSeq transcript (Entrez)NM_001287249 NM_001352824 NM_152783
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)D2HGDH
Cluster EST : UnigeneHs.516813 [ NCBI ]
CGAP (NCI)Hs.516813
Alternative Splicing GalleryENSG00000180902
Gene ExpressionD2HGDH [ NCBI-GEO ]   D2HGDH [ EBI - ARRAY_EXPRESS ]   D2HGDH [ SEEK ]   D2HGDH [ MEM ]
Gene Expression Viewer (FireBrowse)D2HGDH [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)728294
GTEX Portal (Tissue expression)D2HGDH
Human Protein AtlasENSG00000180902-D2HGDH [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N465   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N465  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N465
Splice isoforms : SwissVarQ8N465
Catalytic activity : Enzyme1.1.99.- [ Enzyme-Expasy ]   1.1.99.-1.1.99.- [ IntEnz-EBI ]   1.1.99.- [ BRENDA ]   1.1.99.- [ KEGG ]   
PhosPhoSitePlusQ8N465
Domaine pattern : Prosite (Expaxy)FAD_PCMH (PS51387)   
Domains : Interpro (EBI)FAD-bd_2    FAD-bd_2-like_sf    FAD-bd_2_sub1    FAD-linked_Oxase-like_C    FAD-linked_oxidase_C    Oxid_FAD_bind_N    Vanillyl_alc_oxidase_C-sub2   
Domain families : Pfam (Sanger)FAD-oxidase_C (PF02913)    FAD_binding_4 (PF01565)   
Domain families : Pfam (NCBI)pfam02913    pfam01565   
Conserved Domain (NCBI)D2HGDH
DMDM Disease mutations728294
Blocks (Seattle)D2HGDH
SuperfamilyQ8N465
Human Protein Atlas [tissue]ENSG00000180902-D2HGDH [tissue]
Peptide AtlasQ8N465
HPRD14502
IPIIPI00166642   IPI01015463   IPI00883619   IPI01014040   IPI00103852   IPI01010926   IPI00871210   IPI00894048   IPI00893605   IPI00893732   IPI00893352   IPI00893761   IPI00893327   
Protein Interaction databases
DIP (DOE-UCLA)Q8N465
IntAct (EBI)Q8N465
FunCoupENSG00000180902
BioGRIDD2HGDH
STRING (EMBL)D2HGDH
ZODIACD2HGDH
Ontologies - Pathways
QuickGOQ8N465
Ontology : AmiGOD-lactate dehydrogenase (cytochrome) activity  mitochondrion  mitochondrion  mitochondrial matrix  2-oxoglutarate metabolic process  response to manganese ion  response to zinc ion  lactate oxidation  respiratory electron transport chain  extrinsic component of cytoplasmic side of plasma membrane  response to cobalt ion  response to magnesium ion  cellular protein metabolic process  response to calcium ion  (R)-2-hydroxyglutarate dehydrogenase activity  (R)-2-hydroxyglutarate dehydrogenase activity  (R)-2-hydroxyglutarate dehydrogenase activity  FAD binding  
Ontology : EGO-EBID-lactate dehydrogenase (cytochrome) activity  mitochondrion  mitochondrion  mitochondrial matrix  2-oxoglutarate metabolic process  response to manganese ion  response to zinc ion  lactate oxidation  respiratory electron transport chain  extrinsic component of cytoplasmic side of plasma membrane  response to cobalt ion  response to magnesium ion  cellular protein metabolic process  response to calcium ion  (R)-2-hydroxyglutarate dehydrogenase activity  (R)-2-hydroxyglutarate dehydrogenase activity  (R)-2-hydroxyglutarate dehydrogenase activity  FAD binding  
NDEx NetworkD2HGDH
Atlas of Cancer Signalling NetworkD2HGDH
Wikipedia pathwaysD2HGDH
Orthology - Evolution
OrthoDB728294
GeneTree (enSembl)ENSG00000180902
Phylogenetic Trees/Animal Genes : TreeFamD2HGDH
HOGENOMQ8N465
Homologs : HomoloGeneD2HGDH
Homology/Alignments : Family Browser (UCSC)D2HGDH
Gene fusions - Rearrangements
Fusion : QuiverD2HGDH
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerD2HGDH [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)D2HGDH
dbVarD2HGDH
ClinVarD2HGDH
1000_GenomesD2HGDH 
Exome Variant ServerD2HGDH
ExAC (Exome Aggregation Consortium)ENSG00000180902
GNOMAD BrowserENSG00000180902
Varsome BrowserD2HGDH
Genetic variants : HAPMAP728294
Genomic Variants (DGV)D2HGDH [DGVbeta]
DECIPHERD2HGDH [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisD2HGDH 
Mutations
ICGC Data PortalD2HGDH 
TCGA Data PortalD2HGDH 
Broad Tumor PortalD2HGDH
OASIS PortalD2HGDH [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICD2HGDH  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DD2HGDH
Mutations and Diseases : HGMDD2HGDH
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch D2HGDH
DgiDB (Drug Gene Interaction Database)D2HGDH
DoCM (Curated mutations)D2HGDH (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)D2HGDH (select a term)
intoGenD2HGDH
Cancer3DD2HGDH(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600721    609186   
Orphanet11341   
DisGeNETD2HGDH
MedgenD2HGDH
Genetic Testing Registry D2HGDH
NextProtQ8N465 [Medical]
TSGene728294
GENETestsD2HGDH
Target ValidationD2HGDH
Huge Navigator D2HGDH [HugePedia]
snp3D : Map Gene to Disease728294
BioCentury BCIQD2HGDH
ClinGenD2HGDH
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD728294
Chemical/Pharm GKB GenePA143485446
Clinical trialD2HGDH
Miscellaneous
canSAR (ICR)D2HGDH (select the gene name)
DataMed IndexD2HGDH
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineD2HGDH
EVEXD2HGDH
GoPubMedD2HGDH
iHOPD2HGDH
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Nov 13 17:39:40 CET 2019
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