Atlas of Genetics and Cytogenetics in Oncology and Haematology

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DCAF13 (DDB1 and CUL4 associated factor 13)

Identity

Alias_namesWDSOF1
WD repeats and SOF1 domain containing
Alias_symbol (synonym)DKFZP564O0463
Gm83
HSPC064
Sof1
Other aliasGM83
HGNC (Hugo) DCAF13
LocusID (NCBI) 25879
Atlas_Id 40320
Location 8q22.3  [Link to chromosome band 8q22]
Location_base_pair Starts at 103414714 and ends at 103443452 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
DCAF13 (8q22.3) / DCAF13 (8q22.3)KIF1A (2q37.3) / DCAF13 (8q22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)DCAF13   24535
Cards
Entrez_Gene (NCBI)DCAF13  25879  DDB1 and CUL4 associated factor 13
AliasesGM83; HSPC064; Sof1; WDSOF1
GeneCards (Weizmann)DCAF13
Ensembl hg19 (Hinxton)ENSG00000164934 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164934 [Gene_View]  ENSG00000164934 [Sequence]  chr8:103414714-103443452 [Contig_View]  DCAF13 [Vega]
ICGC DataPortalENSG00000164934
TCGA cBioPortalDCAF13
AceView (NCBI)DCAF13
Genatlas (Paris)DCAF13
WikiGenes25879
SOURCE (Princeton)DCAF13
Genetics Home Reference (NIH)DCAF13
Genomic and cartography
GoldenPath hg38 (UCSC)DCAF13  -     chr8:103414714-103443452 +  8q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DCAF13  -     8q22.3   [Description]    (hg19-Feb_2009)
GoldenPathDCAF13 - 8q22.3 [CytoView hg19]  DCAF13 - 8q22.3 [CytoView hg38]
ImmunoBaseENSG00000164934
Mapping of homologs : NCBIDCAF13 [Mapview hg19]  DCAF13 [Mapview hg38]
OMIM616196   
Gene and transcription
Genbank (Entrez)AF161549 AK001693 AK001874 AK027799 AK074725
RefSeq transcript (Entrez)NM_015420
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DCAF13
Cluster EST : UnigeneHs.532265 [ NCBI ]
CGAP (NCI)Hs.532265
Alternative Splicing GalleryENSG00000164934
Gene ExpressionDCAF13 [ NCBI-GEO ]   DCAF13 [ EBI - ARRAY_EXPRESS ]   DCAF13 [ SEEK ]   DCAF13 [ MEM ]
Gene Expression Viewer (FireBrowse)DCAF13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25879
GTEX Portal (Tissue expression)DCAF13
Human Protein AtlasENSG00000164934-DCAF13 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NV06   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NV06  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NV06
Splice isoforms : SwissVarQ9NV06
PhosPhoSitePlusQ9NV06
Domaine pattern : Prosite (Expaxy)WD_REPEATS_1 (PS00678)    WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)Sof1    TIF_beta_prop-like    WD40/YVTN_repeat-like_dom_sf    WD40_repeat    WD40_repeat_CS    WD40_repeat_dom    WD40_repeat_dom_sf   
Domain families : Pfam (Sanger)eIF2A (PF08662)    Sof1 (PF04158)    WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam08662    pfam04158    pfam00400   
Domain families : Smart (EMBL)WD40 (SM00320)  
Conserved Domain (NCBI)DCAF13
DMDM Disease mutations25879
Blocks (Seattle)DCAF13
SuperfamilyQ9NV06
Human Protein Atlas [tissue]ENSG00000164934-DCAF13 [tissue]
Peptide AtlasQ9NV06
HPRD08528
IPIIPI00747916   IPI00929259   IPI00973418   IPI00306642   IPI00973743   IPI00974441   
Protein Interaction databases
DIP (DOE-UCLA)Q9NV06
IntAct (EBI)Q9NV06
FunCoupENSG00000164934
BioGRIDDCAF13
STRING (EMBL)DCAF13
ZODIACDCAF13
Ontologies - Pathways
QuickGOQ9NV06
Ontology : AmiGOmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  RNA binding  nucleus  nucleoplasm  nucleolus  nucleolus  centrosome  cytosol  rRNA processing  protein ubiquitination  cell junction  estrogen receptor binding  small-subunit processome  post-translational protein modification  Cul4-RING E3 ubiquitin ligase complex  Cul4-RING E3 ubiquitin ligase complex  
Ontology : EGO-EBImaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  RNA binding  nucleus  nucleoplasm  nucleolus  nucleolus  centrosome  cytosol  rRNA processing  protein ubiquitination  cell junction  estrogen receptor binding  small-subunit processome  post-translational protein modification  Cul4-RING E3 ubiquitin ligase complex  Cul4-RING E3 ubiquitin ligase complex  
NDEx NetworkDCAF13
Atlas of Cancer Signalling NetworkDCAF13
Wikipedia pathwaysDCAF13
Orthology - Evolution
OrthoDB25879
GeneTree (enSembl)ENSG00000164934
Phylogenetic Trees/Animal Genes : TreeFamDCAF13
HOGENOMQ9NV06
Homologs : HomoloGeneDCAF13
Homology/Alignments : Family Browser (UCSC)DCAF13
Gene fusions - Rearrangements
Fusion : QuiverDCAF13
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDCAF13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DCAF13
dbVarDCAF13
ClinVarDCAF13
1000_GenomesDCAF13 
Exome Variant ServerDCAF13
ExAC (Exome Aggregation Consortium)ENSG00000164934
GNOMAD BrowserENSG00000164934
Varsome BrowserDCAF13
Genetic variants : HAPMAP25879
Genomic Variants (DGV)DCAF13 [DGVbeta]
DECIPHERDCAF13 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDCAF13 
Mutations
ICGC Data PortalDCAF13 
TCGA Data PortalDCAF13 
Broad Tumor PortalDCAF13
OASIS PortalDCAF13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDCAF13  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DDCAF13
Mutations and Diseases : HGMDDCAF13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DCAF13
DgiDB (Drug Gene Interaction Database)DCAF13
DoCM (Curated mutations)DCAF13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DCAF13 (select a term)
intoGenDCAF13
Cancer3DDCAF13(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616196   
Orphanet
DisGeNETDCAF13
MedgenDCAF13
Genetic Testing Registry DCAF13
NextProtQ9NV06 [Medical]
TSGene25879
GENETestsDCAF13
Target ValidationDCAF13
Huge Navigator DCAF13 [HugePedia]
snp3D : Map Gene to Disease25879
BioCentury BCIQDCAF13
ClinGenDCAF13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD25879
Chemical/Pharm GKB GenePA165585440
Clinical trialDCAF13
Miscellaneous
canSAR (ICR)DCAF13 (select the gene name)
DataMed IndexDCAF13
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDCAF13
EVEXDCAF13
GoPubMedDCAF13
iHOPDCAF13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Nov 13 17:39:48 CET 2019
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