Atlas of Genetics and Cytogenetics in Oncology and Haematology

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DDX24 (DEAD-box helicase 24)

Identity

Alias_namesDEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 24
DEAD (Asp-Glu-Ala-Asp) box polypeptide 24
DEAD (Asp-Glu-Ala-Asp) box helicase 24
Other alias-
HGNC (Hugo) DDX24
LocusID (NCBI) 57062
Atlas_Id 46700
Location 14q32.12  [Link to chromosome band 14q32]
Location_base_pair Starts at 94050922 and ends at 94081212 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
AP2B1 (17q12) / DDX24 (14q32.12)DDX24 (14q32.12) / DDX24 (14q32.12)DDX24 (14q32.12) / EPC1 (10p11.22)
DDX24 (14q32.12) / MEG3 (14q32.2)DDX24 (14q32.12) / NDRG1 (8q24.22)DDX24 (14q32.12) / RARRES1 (3q25.32)
DDX24 (14q32.12) / SIAE (11q24.2)DDX24 (14q32.12) / SYN3 (22q12.3)PTMS (12p13.31) / DDX24 (14q32.12)
RPS6KA5 (14q32.11) / DDX24 (14q32.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)DDX24   13266
Cards
Entrez_Gene (NCBI)DDX24  57062  DEAD-box helicase 24
Aliases
GeneCards (Weizmann)DDX24
Ensembl hg19 (Hinxton)ENSG00000089737 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000089737 [Gene_View]  ENSG00000089737 [Sequence]  chr14:94050922-94081212 [Contig_View]  DDX24 [Vega]
ICGC DataPortalENSG00000089737
TCGA cBioPortalDDX24
AceView (NCBI)DDX24
Genatlas (Paris)DDX24
WikiGenes57062
SOURCE (Princeton)DDX24
Genetics Home Reference (NIH)DDX24
Genomic and cartography
GoldenPath hg38 (UCSC)DDX24  -     chr14:94050922-94081212 -  14q32.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DDX24  -     14q32.12   [Description]    (hg19-Feb_2009)
GoldenPathDDX24 - 14q32.12 [CytoView hg19]  DDX24 - 14q32.12 [CytoView hg38]
ImmunoBaseENSG00000089737
Mapping of homologs : NCBIDDX24 [Mapview hg19]  DDX24 [Mapview hg38]
OMIM606181   
Gene and transcription
Genbank (Entrez)AB209382 AF134475 AF145022 AF161446 AF214731
RefSeq transcript (Entrez)NM_020414
RefSeq genomic (Entrez)NC_000014 NT_187601
Consensus coding sequences : CCDS (NCBI)DDX24
Cluster EST : UnigeneHs.510328 [ NCBI ]
CGAP (NCI)Hs.510328
Alternative Splicing GalleryENSG00000089737
Gene ExpressionDDX24 [ NCBI-GEO ]   DDX24 [ EBI - ARRAY_EXPRESS ]   DDX24 [ SEEK ]   DDX24 [ MEM ]
Gene Expression Viewer (FireBrowse)DDX24 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57062
GTEX Portal (Tissue expression)DDX24
Human Protein AtlasENSG00000089737-DDX24 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9GZR7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9GZR7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9GZR7
Splice isoforms : SwissVarQ9GZR7
PhosPhoSitePlusQ9GZR7
Domaine pattern : Prosite (Expaxy)DEAD_ATP_HELICASE (PS00039)    HELICASE_ATP_BIND_1 (PS51192)    HELICASE_CTER (PS51194)    Q_MOTIF (PS51195)   
Domains : Interpro (EBI)DEAD/DEAH_box_helicase_dom    Helicase_ATP-bd    Helicase_C    P-loop_NTPase    RNA-helicase_DEAD-box_CS    RNA_helicase_DEAD_Q_motif   
Domain families : Pfam (Sanger)DEAD (PF00270)    Helicase_C (PF00271)   
Domain families : Pfam (NCBI)pfam00270    pfam00271   
Domain families : Smart (EMBL)DEXDc (SM00487)  HELICc (SM00490)  
Conserved Domain (NCBI)DDX24
DMDM Disease mutations57062
Blocks (Seattle)DDX24
SuperfamilyQ9GZR7
Human Protein Atlas [tissue]ENSG00000089737-DDX24 [tissue]
Peptide AtlasQ9GZR7
HPRD05860
IPIIPI00006987   IPI00910382   IPI00911118   IPI01015228   IPI01016010   IPI00923556   IPI00000207   IPI01024834   
Protein Interaction databases
DIP (DOE-UCLA)Q9GZR7
IntAct (EBI)Q9GZR7
FunCoupENSG00000089737
BioGRIDDDX24
STRING (EMBL)DDX24
ZODIACDDX24
Ontologies - Pathways
QuickGOQ9GZR7
Ontology : AmiGORNA binding  RNA binding  RNA helicase activity  RNA helicase activity  ATP binding  nucleolus  nucleolus  rRNA processing  membrane  RNA metabolic process  
Ontology : EGO-EBIRNA binding  RNA binding  RNA helicase activity  RNA helicase activity  ATP binding  nucleolus  nucleolus  rRNA processing  membrane  RNA metabolic process  
NDEx NetworkDDX24
Atlas of Cancer Signalling NetworkDDX24
Wikipedia pathwaysDDX24
Orthology - Evolution
OrthoDB57062
GeneTree (enSembl)ENSG00000089737
Phylogenetic Trees/Animal Genes : TreeFamDDX24
HOGENOMQ9GZR7
Homologs : HomoloGeneDDX24
Homology/Alignments : Family Browser (UCSC)DDX24
Gene fusions - Rearrangements
Fusion : QuiverDDX24
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDDX24 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DDX24
dbVarDDX24
ClinVarDDX24
1000_GenomesDDX24 
Exome Variant ServerDDX24
ExAC (Exome Aggregation Consortium)ENSG00000089737
GNOMAD BrowserENSG00000089737
Varsome BrowserDDX24
Genetic variants : HAPMAP57062
Genomic Variants (DGV)DDX24 [DGVbeta]
DECIPHERDDX24 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDDX24 
Mutations
ICGC Data PortalDDX24 
TCGA Data PortalDDX24 
Broad Tumor PortalDDX24
OASIS PortalDDX24 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDDX24  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DDDX24
Mutations and Diseases : HGMDDDX24
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DDX24
DgiDB (Drug Gene Interaction Database)DDX24
DoCM (Curated mutations)DDX24 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DDX24 (select a term)
intoGenDDX24
Cancer3DDDX24(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606181   
Orphanet
DisGeNETDDX24
MedgenDDX24
Genetic Testing Registry DDX24
NextProtQ9GZR7 [Medical]
TSGene57062
GENETestsDDX24
Target ValidationDDX24
Huge Navigator DDX24 [HugePedia]
snp3D : Map Gene to Disease57062
BioCentury BCIQDDX24
ClinGenDDX24
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57062
Chemical/Pharm GKB GenePA27211
Clinical trialDDX24
Miscellaneous
canSAR (ICR)DDX24 (select the gene name)
DataMed IndexDDX24
Probes
Litterature
PubMed73 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDDX24
EVEXDDX24
GoPubMedDDX24
iHOPDDX24
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Nov 13 17:40:01 CET 2019
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