Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

DEC1 (deleted in esophageal cancer 1)

Identity

Alias_symbol (synonym)CTS9
Other alias
HGNC (Hugo) 02-Dec
LocusID (NCBI) 50514
Atlas_Id 40294
Location 9q33.1  [Link to chromosome band 9q33]
Location_base_pair Starts at 115141818 and ends at 115402644 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ARF4 (3p14.3) / DEC1 (9q33.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)02-Dec   23658
Cards
Entrez_Gene (NCBI)DEC1  50514  deleted in esophageal cancer 1
AliasesCTS9
GeneCards (Weizmann)DEC1
Ensembl hg19 (Hinxton)ENSG00000173077 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000173077 [Gene_View]  ENSG00000173077 [Sequence]  chr9:115141818-115402644 [Contig_View]  DEC1 [Vega]
ICGC DataPortalENSG00000173077
TCGA cBioPortalDEC1
AceView (NCBI)DEC1
Genatlas (Paris)DEC1
WikiGenes50514
SOURCE (Princeton)DEC1
Genetics Home Reference (NIH)DEC1
Genomic and cartography
GoldenPath hg38 (UCSC)DEC1  -     chr9:115141818-115402644 +  9q33.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DEC1  -     9q33.1   [Description]    (hg19-Feb_2009)
GoldenPathDEC1 - 9q33.1 [CytoView hg19]  DEC1 - 9q33.1 [CytoView hg38]
ImmunoBaseENSG00000173077
Mapping of homologs : NCBIDEC1 [Mapview hg19]  DEC1 [Mapview hg38]
OMIM604767   
Gene and transcription
Genbank (Entrez)AB022761 AK056153 BC030567 BC107103
RefSeq transcript (Entrez)NM_017418
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DEC1
Cluster EST : UnigeneHs.148841 [ NCBI ]
CGAP (NCI)Hs.148841
Alternative Splicing GalleryENSG00000173077
Gene ExpressionDEC1 [ NCBI-GEO ]   DEC1 [ EBI - ARRAY_EXPRESS ]   DEC1 [ SEEK ]   DEC1 [ MEM ]
Gene Expression Viewer (FireBrowse)DEC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)50514
GTEX Portal (Tissue expression)DEC1
Human Protein AtlasENSG00000173077-DEC1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P2X7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P2X7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P2X7
Splice isoforms : SwissVarQ9P2X7
PhosPhoSitePlusQ9P2X7
Domains : Interpro (EBI)02-Dec   
Domain families : Pfam (Sanger)02-Dec (PF15859)   
Domain families : Pfam (NCBI)pfam15859   
Conserved Domain (NCBI)DEC1
DMDM Disease mutations50514
Blocks (Seattle)DEC1
SuperfamilyQ9P2X7
Human Protein Atlas [tissue]ENSG00000173077-DEC1 [tissue]
Peptide AtlasQ9P2X7
HPRD16068
IPIIPI00178720   IPI00816683   
Protein Interaction databases
DIP (DOE-UCLA)Q9P2X7
IntAct (EBI)Q9P2X7
FunCoupENSG00000173077
BioGRIDDEC1
STRING (EMBL)DEC1
ZODIACDEC1
Ontologies - Pathways
QuickGOQ9P2X7
Ontology : AmiGOnegative regulation of cell proliferation  
Ontology : EGO-EBInegative regulation of cell proliferation  
NDEx NetworkDEC1
Atlas of Cancer Signalling NetworkDEC1
Wikipedia pathwaysDEC1
Orthology - Evolution
OrthoDB50514
GeneTree (enSembl)ENSG00000173077
Phylogenetic Trees/Animal Genes : TreeFam02-Dec
HOGENOMQ9P2X7
Homologs : HomoloGeneDEC1
Homology/Alignments : Family Browser (UCSC)DEC1
Gene fusions - Rearrangements
Fusion : QuiverDEC1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDEC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DEC1
dbVarDEC1
ClinVarDEC1
1000_GenomesDEC1 
Exome Variant ServerDEC1
ExAC (Exome Aggregation Consortium)ENSG00000173077
GNOMAD BrowserENSG00000173077
Varsome BrowserDEC1
Genetic variants : HAPMAP50514
Genomic Variants (DGV)DEC1 [DGVbeta]
DECIPHERDEC1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDEC1 
Mutations
ICGC Data Portal02-Dec 
TCGA Data Portal02-Dec 
Broad Tumor Portal02-Dec
OASIS Portal02-Dec [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDEC1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DDEC1
Mutations and Diseases : HGMD02-Dec
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DEC1
DgiDB (Drug Gene Interaction Database)DEC1
DoCM (Curated mutations)DEC1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DEC1 (select a term)
intoGenDEC1
Cancer3DDEC1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604767   
Orphanet
DisGeNETDEC1
MedgenDEC1
Genetic Testing Registry DEC1
NextProtQ9P2X7 [Medical]
TSGene50514
GENETestsDEC1
Target ValidationDEC1
Huge Navigator 02-Dec [HugePedia]
snp3D : Map Gene to Disease50514
BioCentury BCIQDEC1
ClinGenDEC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD50514
Chemical/Pharm GKB GenePA134898625
Clinical trialDEC1
Miscellaneous
canSAR (ICR)DEC1 (select the gene name)
DataMed IndexDEC1
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDEC1
EVEXDEC1
GoPubMedDEC1
iHOPDEC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Nov 13 17:40:07 CET 2019
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.