Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

DEFB109A (defensin beta 109A (pseudogene))

Identity

Alias_namesDEFB109
DEFB109P1
defensin, beta 109
defensin, beta 109, pseudogene 1
defensin beta 109 pseudogene 1
Alias_symbol (synonym)DEFB-9
Other alias
HGNC (Hugo) DEFB109A
LocusID (NCBI) 245912
Atlas_Id 79892
Location 8p23.1  [Link to chromosome band 8p23]
Location_base_pair Starts at 12393284 and ends at 12400365 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)DEFB109A   18090
Cards
Entrez_Gene (NCBI)DEFB109A  245912  defensin beta 109A (pseudogene)
AliasesDEFB-9; DEFB109; DEFB109P1
GeneCards (Weizmann)DEFB109A
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr8:12393284-12400365 [Contig_View]  DEFB109A [Vega]
TCGA cBioPortalDEFB109A
AceView (NCBI)DEFB109A
Genatlas (Paris)DEFB109A
WikiGenes245912
SOURCE (Princeton)DEFB109A
Genetics Home Reference (NIH)DEFB109A
Genomic and cartography
GoldenPath hg38 (UCSC)DEFB109A  -     chr8:12393284-12400365 -  8p23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DEFB109A  -     8p23.1   [Description]    (hg19-Feb_2009)
GoldenPathDEFB109A - 8p23.1 [CytoView hg19]  DEFB109A - 8p23.1 [CytoView hg38]
Mapping of homologs : NCBIDEFB109A [Mapview hg19]  DEFB109A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF540981
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DEFB109A
Cluster EST : UnigeneHs.721640 [ NCBI ]
CGAP (NCI)Hs.721640
Gene ExpressionDEFB109A [ NCBI-GEO ]   DEFB109A [ EBI - ARRAY_EXPRESS ]   DEFB109A [ SEEK ]   DEFB109A [ MEM ]
Gene Expression Viewer (FireBrowse)DEFB109A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)245912
GTEX Portal (Tissue expression)DEFB109A
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)DEFB109A
DMDM Disease mutations245912
Blocks (Seattle)DEFB109A
Protein Interaction databases
BioGRIDDEFB109A
STRING (EMBL)DEFB109A
ZODIACDEFB109A
Ontologies - Pathways
Huge Navigator DEFB109A [HugePedia]
snp3D : Map Gene to Disease245912
BioCentury BCIQDEFB109A
ClinGenDEFB109A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD245912
Chemical/Pharm GKB GenePA38486
Clinical trialDEFB109A
Miscellaneous
canSAR (ICR)DEFB109A (select the gene name)
DataMed IndexDEFB109A
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDEFB109A
EVEXDEFB109A
GoPubMedDEFB109A
iHOPDEFB109A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Sep 3 15:25:28 CEST 2019

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.