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DEFB109B (defensin beta 109B)

Identity

Alias_namesDEFB109P1B
defensin, beta 109, pseudogene 1B
defensin beta 109 pseudogene 1B
Other aliasDEF109P1B
DEFB109
HBD9
HGNC (Hugo) DEFB109B
LocusID (NCBI) 641517
Atlas_Id 79973
Location 8_KI270813v1_alt  [Link to chromosome band 8]
Location_base_pair Starts at 3979 and ends at 11101 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)DEFB109B   33469
Cards
Entrez_Gene (NCBI)DEFB109B  641517  defensin beta 109B
AliasesDEF109P1B; DEFB109; DEFB109P1B; HBD9
GeneCards (Weizmann)DEFB109B
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr8_KI270813v1_alt:3979-11101 [Contig_View]  DEFB109B [Vega]
TCGA cBioPortalDEFB109B
AceView (NCBI)DEFB109B
Genatlas (Paris)DEFB109B
WikiGenes641517
SOURCE (Princeton)DEFB109B
Genetics Home Reference (NIH)DEFB109B
Genomic and cartography
GoldenPath hg38 (UCSC)DEFB109B  -     chr8_KI270813v1_alt:3979-11101 +  8_KI270813v1_alt   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DEFB109B  -     8_KI270813v1_alt   [Description]    (hg19-Feb_2009)
GoldenPathDEFB109B - 8_KI270813v1_alt [CytoView hg19]  DEFB109B - 8_KI270813v1_alt [CytoView hg38]
Mapping of homologs : NCBIDEFB109B [Mapview hg19]  DEFB109B [Mapview hg38]
Gene and transcription
Genbank (Entrez)DQ012013
RefSeq transcript (Entrez)NM_001037380
RefSeq genomic (Entrez)NC_000008 NG_055544 NT_187570
Consensus coding sequences : CCDS (NCBI)DEFB109B
Cluster EST : UnigeneHs.616079 [ NCBI ]
CGAP (NCI)Hs.616079
Gene ExpressionDEFB109B [ NCBI-GEO ]   DEFB109B [ EBI - ARRAY_EXPRESS ]   DEFB109B [ SEEK ]   DEFB109B [ MEM ]
Gene Expression Viewer (FireBrowse)DEFB109B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)641517
GTEX Portal (Tissue expression)DEFB109B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ30KR1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ30KR1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ30KR1
Splice isoforms : SwissVarQ30KR1
PhosPhoSitePlusQ30KR1
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)DEFB109B
DMDM Disease mutations641517
Blocks (Seattle)DEFB109B
SuperfamilyQ30KR1
Peptide AtlasQ30KR1
Protein Interaction databases
DIP (DOE-UCLA)Q30KR1
IntAct (EBI)Q30KR1
BioGRIDDEFB109B
STRING (EMBL)DEFB109B
ZODIACDEFB109B
Ontologies - Pathways
QuickGOQ30KR1
Ontology : AmiGOextracellular space  chemotaxis  CCR6 chemokine receptor binding  chemoattractant activity  defense response to bacterium  positive chemotaxis  cell chemotaxis  
Ontology : EGO-EBIextracellular space  chemotaxis  CCR6 chemokine receptor binding  chemoattractant activity  defense response to bacterium  positive chemotaxis  cell chemotaxis  
NDEx NetworkDEFB109B
Atlas of Cancer Signalling NetworkDEFB109B
Wikipedia pathwaysDEFB109B
Orthology - Evolution
OrthoDB641517
Phylogenetic Trees/Animal Genes : TreeFamDEFB109B
HOGENOMQ30KR1
Homologs : HomoloGeneDEFB109B
Homology/Alignments : Family Browser (UCSC)DEFB109B
Gene fusions - Rearrangements
Fusion : QuiverDEFB109B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDEFB109B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DEFB109B
dbVarDEFB109B
ClinVarDEFB109B
1000_GenomesDEFB109B 
Exome Variant ServerDEFB109B
Varsome BrowserDEFB109B
Genetic variants : HAPMAP641517
Genomic Variants (DGV)DEFB109B [DGVbeta]
DECIPHERDEFB109B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDEFB109B 
Mutations
ICGC Data PortalDEFB109B 
TCGA Data PortalDEFB109B 
Broad Tumor PortalDEFB109B
OASIS PortalDEFB109B [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDDEFB109B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DEFB109B
DgiDB (Drug Gene Interaction Database)DEFB109B
DoCM (Curated mutations)DEFB109B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DEFB109B (select a term)
intoGenDEFB109B
Cancer3DDEFB109B(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETDEFB109B
MedgenDEFB109B
Genetic Testing Registry DEFB109B
NextProtQ30KR1 [Medical]
TSGene641517
GENETestsDEFB109B
Target ValidationDEFB109B
Huge Navigator DEFB109B [HugePedia]
snp3D : Map Gene to Disease641517
BioCentury BCIQDEFB109B
ClinGenDEFB109B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD641517
Clinical trialDEFB109B
Miscellaneous
canSAR (ICR)DEFB109B (select the gene name)
DataMed IndexDEFB109B
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDEFB109B
EVEXDEFB109B
GoPubMedDEFB109B
iHOPDEFB109B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 15:25:28 CEST 2019

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