Atlas of Genetics and Cytogenetics in Oncology and Haematology

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DMRTB1 (DMRT like family B with proline rich C-terminal 1)

Identity

Alias_namesDMRT-like family B with proline-rich C-terminal, 1
Other alias-
HGNC (Hugo) DMRTB1
LocusID (NCBI) 63948
Atlas_Id 62534
Location 1p32.3  [Link to chromosome band 1p32]
Location_base_pair Starts at 53459399 and ends at 53467487 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)DMRTB1   13913
Cards
Entrez_Gene (NCBI)DMRTB1  63948  DMRT like family B with proline rich C-terminal 1
Aliases
GeneCards (Weizmann)DMRTB1
Ensembl hg19 (Hinxton)ENSG00000143006 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000143006 [Gene_View]  ENSG00000143006 [Sequence]  chr1:53459399-53467487 [Contig_View]  DMRTB1 [Vega]
ICGC DataPortalENSG00000143006
TCGA cBioPortalDMRTB1
AceView (NCBI)DMRTB1
Genatlas (Paris)DMRTB1
WikiGenes63948
SOURCE (Princeton)DMRTB1
Genetics Home Reference (NIH)DMRTB1
Genomic and cartography
GoldenPath hg38 (UCSC)DMRTB1  -     chr1:53459399-53467487 +  1p32.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DMRTB1  -     1p32.3   [Description]    (hg19-Feb_2009)
GoldenPathDMRTB1 - 1p32.3 [CytoView hg19]  DMRTB1 - 1p32.3 [CytoView hg38]
ImmunoBaseENSG00000143006
Mapping of homologs : NCBIDMRTB1 [Mapview hg19]  DMRTB1 [Mapview hg38]
OMIM614805   
Gene and transcription
Genbank (Entrez)AJ291671 AK057273 AK302085 BC029566 KU178739
RefSeq transcript (Entrez)NM_033067
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DMRTB1
Cluster EST : UnigeneHs.131654 [ NCBI ]
CGAP (NCI)Hs.131654
Alternative Splicing GalleryENSG00000143006
Gene ExpressionDMRTB1 [ NCBI-GEO ]   DMRTB1 [ EBI - ARRAY_EXPRESS ]   DMRTB1 [ SEEK ]   DMRTB1 [ MEM ]
Gene Expression Viewer (FireBrowse)DMRTB1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)63948
GTEX Portal (Tissue expression)DMRTB1
Human Protein AtlasENSG00000143006-DMRTB1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96MA1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96MA1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96MA1
Splice isoforms : SwissVarQ96MA1
PhosPhoSitePlusQ96MA1
Domaine pattern : Prosite (Expaxy)DM_1 (PS40000)    DM_2 (PS50809)   
Domains : Interpro (EBI)DM_DNA-bd    DM_DNA-bd_sf    DMRT/dsx/mab-3   
Domain families : Pfam (Sanger)DM (PF00751)   
Domain families : Pfam (NCBI)pfam00751   
Domain families : Smart (EMBL)DM (SM00301)  
Conserved Domain (NCBI)DMRTB1
DMDM Disease mutations63948
Blocks (Seattle)DMRTB1
SuperfamilyQ96MA1
Human Protein Atlas [tissue]ENSG00000143006-DMRTB1 [tissue]
Peptide AtlasQ96MA1
HPRD16828
IPIIPI00151883   IPI00909305   
Protein Interaction databases
DIP (DOE-UCLA)Q96MA1
IntAct (EBI)Q96MA1
FunCoupENSG00000143006
BioGRIDDMRTB1
STRING (EMBL)DMRTB1
ZODIACDMRTB1
Ontologies - Pathways
QuickGOQ96MA1
Ontology : AmiGODNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  nucleus  regulation of transcription by RNA polymerase II  protein homodimerization activity  sequence-specific DNA binding  metal ion binding  
Ontology : EGO-EBIDNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  nucleus  regulation of transcription by RNA polymerase II  protein homodimerization activity  sequence-specific DNA binding  metal ion binding  
NDEx NetworkDMRTB1
Atlas of Cancer Signalling NetworkDMRTB1
Wikipedia pathwaysDMRTB1
Orthology - Evolution
OrthoDB63948
GeneTree (enSembl)ENSG00000143006
Phylogenetic Trees/Animal Genes : TreeFamDMRTB1
HOGENOMQ96MA1
Homologs : HomoloGeneDMRTB1
Homology/Alignments : Family Browser (UCSC)DMRTB1
Gene fusions - Rearrangements
Fusion : QuiverDMRTB1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDMRTB1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DMRTB1
dbVarDMRTB1
ClinVarDMRTB1
1000_GenomesDMRTB1 
Exome Variant ServerDMRTB1
ExAC (Exome Aggregation Consortium)ENSG00000143006
GNOMAD BrowserENSG00000143006
Varsome BrowserDMRTB1
Genetic variants : HAPMAP63948
Genomic Variants (DGV)DMRTB1 [DGVbeta]
DECIPHERDMRTB1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDMRTB1 
Mutations
ICGC Data PortalDMRTB1 
TCGA Data PortalDMRTB1 
Broad Tumor PortalDMRTB1
OASIS PortalDMRTB1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDMRTB1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DDMRTB1
Mutations and Diseases : HGMDDMRTB1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DMRTB1
DgiDB (Drug Gene Interaction Database)DMRTB1
DoCM (Curated mutations)DMRTB1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DMRTB1 (select a term)
intoGenDMRTB1
Cancer3DDMRTB1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614805   
Orphanet
DisGeNETDMRTB1
MedgenDMRTB1
Genetic Testing Registry DMRTB1
NextProtQ96MA1 [Medical]
TSGene63948
GENETestsDMRTB1
Target ValidationDMRTB1
Huge Navigator DMRTB1 [HugePedia]
snp3D : Map Gene to Disease63948
BioCentury BCIQDMRTB1
ClinGenDMRTB1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD63948
Chemical/Pharm GKB GenePA27386
Clinical trialDMRTB1
Miscellaneous
canSAR (ICR)DMRTB1 (select the gene name)
DataMed IndexDMRTB1
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDMRTB1
EVEXDMRTB1
GoPubMedDMRTB1
iHOPDMRTB1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 15:25:53 CEST 2019
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