Atlas of Genetics and Cytogenetics in Oncology and Haematology

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DNAJA4 (DnaJ (Hsp40) homolog, subfamily A, member 4)

Identity

Other namesMST104
MSTP104
PRO1472
HGNC (Hugo) DNAJA4
LocusID (NCBI) 55466
Location 15q25.1
Location_base_pair Starts at 78556989 and ends at 78574538 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)DNAJA4   14885
Cards
Entrez_Gene (NCBI)DNAJA4  55466  DnaJ (Hsp40) homolog, subfamily A, member 4
GeneCards (Weizmann)DNAJA4
Ensembl (Hinxton)ENSG00000140403 [Gene_View]  chr15:78556989-78574538 [Contig_View]  DNAJA4 [Vega]
ICGC DataPortalENSG00000140403
cBioPortalDNAJA4
AceView (NCBI)DNAJA4
Genatlas (Paris)DNAJA4
WikiGenes55466
SOURCE (Princeton)NM_001130182 NM_001130183 NM_018602
Genomic and cartography
GoldenPath (UCSC)DNAJA4  -  15q25.1   chr15:78556989-78574538 +  15q25.1   [Description]    (hg19-Feb_2009)
EnsemblDNAJA4 - 15q25.1 [CytoView]
Mapping of homologs : NCBIDNAJA4 [Mapview]
Gene and transcription
Genbank (Entrez)AF116663 AF173388 AK025069 AK090898 AK096616
RefSeq transcript (Entrez)NM_001130182 NM_001130183 NM_018602
RefSeq genomic (Entrez)AC_000147 NC_000015 NC_018926 NT_010194 NW_001838219 NW_004929398
Consensus coding sequences : CCDS (NCBI)DNAJA4
Cluster EST : UnigeneHs.513053 [ NCBI ]
CGAP (NCI)Hs.513053
Alternative Splicing : Fast-db (Paris)GSHG0010049
Alternative Splicing GalleryENSG00000140403
Gene ExpressionDNAJA4 [ NCBI-GEO ]     DNAJA4 [ SEEK ]   DNAJA4 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WW22 (Uniprot)
NextProtQ8WW22  [Medical]
With graphics : InterProQ8WW22
Splice isoforms : SwissVarQ8WW22 (Swissvar)
Domaine pattern : Prosite (Expaxy)DNAJ_1 (PS00636)    DNAJ_2 (PS50076)    ZF_CR (PS51188)   
Domains : Interpro (EBI)DnaJ [organisation]   DnaJ_C [organisation]   DnaJ_domain [organisation]   DnaJ_domain_CS [organisation]   HSP40/DnaJ_pept-bd [organisation]   HSP_DnaJ_Cys-rich_dom [organisation]  
Related proteins : CluSTrQ8WW22
Domain families : Pfam (Sanger)CTDII (PF01556)    DnaJ (PF00226)    DnaJ_CXXCXGXG (PF00684)   
Domain families : Pfam (NCBI)pfam01556    pfam00226    pfam00684   
Domain families : Smart (EMBL)DnaJ (SM00271)  
DMDM Disease mutations55466
Blocks (Seattle)Q8WW22
Human Protein AtlasENSG00000140403 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasQ8WW22
HPRD09920
IPIIPI00853174   IPI00465105   IPI00383360   IPI00924511   IPI00794825   IPI01013678   IPI00925147   IPI01012752   IPI01015666   IPI01015303   
Protein Interaction databases
DIP (DOE-UCLA)Q8WW22
IntAct (EBI)Q8WW22
FunCoupENSG00000140403
BioGRIDDNAJA4
InParanoidQ8WW22
Interologous Interaction database Q8WW22
IntegromeDBDNAJA4
STRING (EMBL)DNAJA4
Ontologies - Pathways
Ontology : AmiGOATP binding  protein folding  response to heat  membrane  heat shock protein binding  metal ion binding  unfolded protein binding  
Ontology : EGO-EBIATP binding  protein folding  response to heat  membrane  heat shock protein binding  metal ion binding  unfolded protein binding  
Protein Interaction DatabaseDNAJA4
Wikipedia pathwaysDNAJA4
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)DNAJA4
snp3D : Map Gene to Disease55466
SNP (GeneSNP Utah)DNAJA4
SNP : HGBaseDNAJA4
Genetic variants : HAPMAPDNAJA4
Exome VariantDNAJA4
1000_GenomesDNAJA4 
ICGC programENSG00000140403 
Somatic Mutations in Cancer : COSMICDNAJA4 
CONAN: Copy Number AnalysisDNAJA4 
Mutations and Diseases : HGMDDNAJA4
Genomic VariantsDNAJA4  DNAJA4 [DGVbeta]
dbVarDNAJA4
ClinVarDNAJA4
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM
MedgenDNAJA4
GENETestsDNAJA4
Disease Genetic AssociationDNAJA4
Huge Navigator DNAJA4 [HugePedia]  DNAJA4 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneDNAJA4
Homology/Alignments : Family Browser (UCSC)DNAJA4
Phylogenetic Trees/Animal Genes : TreeFamDNAJA4
Chemical/Protein Interactions : CTD55466
Chemical/Pharm GKB GenePA27411
Clinical trialDNAJA4
Cancer Resource (Charite)ENSG00000140403
Other databases
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
CoreMineDNAJA4
iHOPDNAJA4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jul 11 16:53:07 CEST 2014
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