Atlas of Genetics and Cytogenetics in Oncology and Haematology

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DNAJA4 (DnaJ heat shock protein family (Hsp40) member A4)

Identity

Other namesMST104
MSTP104
PRO1472
HGNC (Hugo) DNAJA4
LocusID (NCBI) 55466
Atlas_Id 47516
Location 15q25.1  [Link to chromosome band 15q25]
Location_base_pair Starts at 78556989 and ends at 78574538 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)		DNAJA4 (15q25.1) / DNAJA4 (15q25.1)DNAJA4 (15q25.1) / FOXK2 (17q25.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)DNAJA4   14885
Cards
Entrez_Gene (NCBI)DNAJA4  55466  DnaJ heat shock protein family (Hsp40) member A4
AliasesMST104; MSTP104; PRO1472
GeneCards (Weizmann)DNAJA4
Ensembl hg19 (Hinxton)ENSG00000140403 [Gene_View]  chr15:78556989-78574538 [Contig_View]  DNAJA4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000140403 [Gene_View]  chr15:78556989-78574538 [Contig_View]  DNAJA4 [Vega]
ICGC DataPortalENSG00000140403
TCGA cBioPortalDNAJA4
AceView (NCBI)DNAJA4
Genatlas (Paris)DNAJA4
WikiGenes55466
SOURCE (Princeton)DNAJA4
Genomic and cartography
GoldenPath hg19 (UCSC)DNAJA4  -     chr15:78556989-78574538 +  15q25.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)DNAJA4  -     15q25.1   [Description]    (hg38-Dec_2013)
EnsemblDNAJA4 - 15q25.1 [CytoView hg19]  DNAJA4 - 15q25.1 [CytoView hg38]
Mapping of homologs : NCBIDNAJA4 [Mapview hg19]  DNAJA4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF116663 AF173388 AK025069 AK090898 AK096616
RefSeq transcript (Entrez)NM_001130182 NM_001130183 NM_018602
RefSeq genomic (Entrez)NC_000015 NC_018926 NT_010194 NW_004929398
Consensus coding sequences : CCDS (NCBI)DNAJA4
Cluster EST : UnigeneHs.513053 [ NCBI ]
CGAP (NCI)Hs.513053
Alternative Splicing GalleryENSG00000140403
Gene ExpressionDNAJA4 [ NCBI-GEO ]   DNAJA4 [ EBI - ARRAY_EXPRESS ]   DNAJA4 [ SEEK ]   DNAJA4 [ MEM ]
Gene Expression Viewer (FireBrowse)DNAJA4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55466
GTEX Portal (Tissue expression)DNAJA4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WW22 (Uniprot)
NextProtQ8WW22  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WW22
Splice isoforms : SwissVarQ8WW22 (Swissvar)
PhosPhoSitePlusQ8WW22
Domaine pattern : Prosite (Expaxy)DNAJ_1 (PS00636)    DNAJ_2 (PS50076)    ZF_CR (PS51188)   
Domains : Interpro (EBI)DnaJ    DnaJ_C    DnaJ_domain    DnaJ_domain_CS    HSP40/DnaJ_pept-bd    HSP_DnaJ_Cys-rich_dom   
Domain families : Pfam (Sanger)DnaJ (PF00226)    DnaJ_C (PF01556)    DnaJ_CXXCXGXG (PF00684)   
Domain families : Pfam (NCBI)pfam00226    pfam01556    pfam00684   
Domain families : Smart (EMBL)DnaJ (SM00271)  
DMDM Disease mutations55466
Blocks (Seattle)DNAJA4
SuperfamilyQ8WW22
Human Protein AtlasENSG00000140403
Peptide AtlasQ8WW22
HPRD09920
IPIIPI00853174   IPI00465105   IPI00383360   IPI00924511   IPI00794825   IPI01013678   IPI00925147   IPI01012752   IPI01015666   IPI01015303   
Protein Interaction databases
DIP (DOE-UCLA)Q8WW22
IntAct (EBI)Q8WW22
FunCoupENSG00000140403
BioGRIDDNAJA4
STRING (EMBL)DNAJA4
ZODIACDNAJA4
Ontologies - Pathways
QuickGOQ8WW22
Ontology : AmiGOprotein binding  ATP binding  cytosol  response to heat  membrane  heat shock protein binding  protein refolding  metal ion binding  unfolded protein binding  chaperone binding  negative regulation of inclusion body assembly  
Ontology : EGO-EBIprotein binding  ATP binding  cytosol  response to heat  membrane  heat shock protein binding  protein refolding  metal ion binding  unfolded protein binding  chaperone binding  negative regulation of inclusion body assembly  
NDEx NetworkDNAJA4
Atlas of Cancer Signalling NetworkDNAJA4
Wikipedia pathwaysDNAJA4
Orthology - Evolution
OrthoDB55466
GeneTree (enSembl)ENSG00000140403
Phylogenetic Trees/Animal Genes : TreeFamDNAJA4
Homologs : HomoloGeneDNAJA4
Homology/Alignments : Family Browser (UCSC)DNAJA4
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerDNAJA4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DNAJA4
dbVarDNAJA4
ClinVarDNAJA4
1000_GenomesDNAJA4 
Exome Variant ServerDNAJA4
ExAC (Exome Aggregation Consortium)DNAJA4 (select the gene name)
Genetic variants : HAPMAP55466
Genomic Variants (DGV)DNAJA4 [DGVbeta]
Mutations
ICGC Data PortalDNAJA4 
TCGA Data PortalDNAJA4 
Broad Tumor PortalDNAJA4
OASIS PortalDNAJA4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDNAJA4 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DNAJA4
DgiDB (Drug Gene Interaction Database)DNAJA4
DoCM (Curated mutations)DNAJA4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DNAJA4 (select a term)
intoGenDNAJA4
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)15:78556989-78574538  ENSG00000140403
CONAN: Copy Number AnalysisDNAJA4 
Mutations and Diseases : HGMDDNAJA4
OMIM
MedgenDNAJA4
Genetic Testing Registry DNAJA4
NextProtQ8WW22 [Medical]
TSGene55466
GENETestsDNAJA4
Huge Navigator DNAJA4 [HugePedia]
snp3D : Map Gene to Disease55466
BioCentury BCIQDNAJA4
ClinGenDNAJA4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55466
Chemical/Pharm GKB GenePA27411
Clinical trialDNAJA4
Miscellaneous
canSAR (ICR)DNAJA4 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDNAJA4
EVEXDNAJA4
GoPubMedDNAJA4
iHOPDNAJA4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Sep 19 18:46:16 CEST 2016
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