Atlas of Genetics and Cytogenetics in Oncology and Haematology

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DNAJC28 (DnaJ heat shock protein family (Hsp40) member C28)

Identity

Alias_namesC21orf55
chromosome 21 open reading frame 55
DnaJ (Hsp40) homolog, subfamily C, member 28
Alias_symbol (synonym)C21orf78
Other alias
HGNC (Hugo) DNAJC28
LocusID (NCBI) 54943
Atlas_Id 56574
Location 21q22.11  [Link to chromosome band 21q22]
Location_base_pair Starts at 33488055 and ends at 33491483 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)DNAJC28   1297
Cards
Entrez_Gene (NCBI)DNAJC28  54943  DnaJ heat shock protein family (Hsp40) member C28
AliasesC21orf55; C21orf78
GeneCards (Weizmann)DNAJC28
Ensembl hg19 (Hinxton)ENSG00000177692 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000177692 [Gene_View]  ENSG00000177692 [Sequence]  chr21:33488055-33491483 [Contig_View]  DNAJC28 [Vega]
ICGC DataPortalENSG00000177692
TCGA cBioPortalDNAJC28
AceView (NCBI)DNAJC28
Genatlas (Paris)DNAJC28
WikiGenes54943
SOURCE (Princeton)DNAJC28
Genetics Home Reference (NIH)DNAJC28
Genomic and cartography
GoldenPath hg38 (UCSC)DNAJC28  -     chr21:33488055-33491483 -  21q22.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DNAJC28  -     21q22.11   [Description]    (hg19-Feb_2009)
GoldenPathDNAJC28 - 21q22.11 [CytoView hg19]  DNAJC28 - 21q22.11 [CytoView hg38]
ImmunoBaseENSG00000177692
Mapping of homologs : NCBIDNAJC28 [Mapview hg19]  DNAJC28 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF462153 AI825667 AK000468 AK225514 BC029509
RefSeq transcript (Entrez)NM_001040192 NM_001320746 NM_017833
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DNAJC28
Cluster EST : UnigeneHs.458308 [ NCBI ]
CGAP (NCI)Hs.458308
Alternative Splicing GalleryENSG00000177692
Gene ExpressionDNAJC28 [ NCBI-GEO ]   DNAJC28 [ EBI - ARRAY_EXPRESS ]   DNAJC28 [ SEEK ]   DNAJC28 [ MEM ]
Gene Expression Viewer (FireBrowse)DNAJC28 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54943
GTEX Portal (Tissue expression)DNAJC28
Human Protein AtlasENSG00000177692-DNAJC28 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NX36   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NX36  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NX36
Splice isoforms : SwissVarQ9NX36
PhosPhoSitePlusQ9NX36
Domaine pattern : Prosite (Expaxy)DNAJ_2 (PS50076)   
Domains : Interpro (EBI)DnaJ_domain    DnaJ_homolog_subfam-C_membr-28    J_dom_sf   
Domain families : Pfam (Sanger)DnaJ (PF00226)    DUF1992 (PF09350)   
Domain families : Pfam (NCBI)pfam00226    pfam09350   
Domain families : Smart (EMBL)DnaJ (SM00271)  
Conserved Domain (NCBI)DNAJC28
DMDM Disease mutations54943
Blocks (Seattle)DNAJC28
SuperfamilyQ9NX36
Human Protein Atlas [tissue]ENSG00000177692-DNAJC28 [tissue]
Peptide AtlasQ9NX36
HPRD10752
IPIIPI00016409   
Protein Interaction databases
DIP (DOE-UCLA)Q9NX36
IntAct (EBI)Q9NX36
FunCoupENSG00000177692
BioGRIDDNAJC28
STRING (EMBL)DNAJC28
ZODIACDNAJC28
Ontologies - Pathways
QuickGOQ9NX36
Ontology : AmiGOprotein binding  retrograde vesicle-mediated transport, Golgi to ER  Golgi organization  Golgi transport complex  Golgi vesicle prefusion complex stabilization  
Ontology : EGO-EBIprotein binding  retrograde vesicle-mediated transport, Golgi to ER  Golgi organization  Golgi transport complex  Golgi vesicle prefusion complex stabilization  
NDEx NetworkDNAJC28
Atlas of Cancer Signalling NetworkDNAJC28
Wikipedia pathwaysDNAJC28
Orthology - Evolution
OrthoDB54943
GeneTree (enSembl)ENSG00000177692
Phylogenetic Trees/Animal Genes : TreeFamDNAJC28
HOGENOMQ9NX36
Homologs : HomoloGeneDNAJC28
Homology/Alignments : Family Browser (UCSC)DNAJC28
Gene fusions - Rearrangements
Fusion : QuiverDNAJC28
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDNAJC28 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DNAJC28
dbVarDNAJC28
ClinVarDNAJC28
1000_GenomesDNAJC28 
Exome Variant ServerDNAJC28
ExAC (Exome Aggregation Consortium)ENSG00000177692
GNOMAD BrowserENSG00000177692
Varsome BrowserDNAJC28
Genetic variants : HAPMAP54943
Genomic Variants (DGV)DNAJC28 [DGVbeta]
DECIPHERDNAJC28 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDNAJC28 
Mutations
ICGC Data PortalDNAJC28 
TCGA Data PortalDNAJC28 
Broad Tumor PortalDNAJC28
OASIS PortalDNAJC28 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDNAJC28  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DDNAJC28
Mutations and Diseases : HGMDDNAJC28
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DNAJC28
DgiDB (Drug Gene Interaction Database)DNAJC28
DoCM (Curated mutations)DNAJC28 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DNAJC28 (select a term)
intoGenDNAJC28
Cancer3DDNAJC28(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETDNAJC28
MedgenDNAJC28
Genetic Testing Registry DNAJC28
NextProtQ9NX36 [Medical]
TSGene54943
GENETestsDNAJC28
Target ValidationDNAJC28
Huge Navigator DNAJC28 [HugePedia]
snp3D : Map Gene to Disease54943
BioCentury BCIQDNAJC28
ClinGenDNAJC28
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54943
Chemical/Pharm GKB GenePA162383922
Clinical trialDNAJC28
Miscellaneous
canSAR (ICR)DNAJC28 (select the gene name)
DataMed IndexDNAJC28
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDNAJC28
EVEXDNAJC28
GoPubMedDNAJC28
iHOPDNAJC28
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Nov 13 17:40:45 CET 2019
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