Atlas of Genetics and Cytogenetics in Oncology and Haematology


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DNAJC7 (DnaJ (Hsp40) homolog, subfamily C, member 7)

Identity

Other namesDJ11
DJC7
TPR2
TTC2
HGNC (Hugo) DNAJC7
LocusID (NCBI) 7266
Location 17q21.2
Location_base_pair Starts at 40128439 and ends at 40169183 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)DNAJC7   12392
Cards
Entrez_Gene (NCBI)DNAJC7  7266  DnaJ (Hsp40) homolog, subfamily C, member 7
GeneCards (Weizmann)DNAJC7
Ensembl (Hinxton)ENSG00000168259 [Gene_View]  chr17:40128439-40169183 [Contig_View]  DNAJC7 [Vega]
ICGC DataPortalENSG00000168259
cBioPortalDNAJC7
AceView (NCBI)DNAJC7
Genatlas (Paris)DNAJC7
WikiGenes7266
SOURCE (Princeton)NM_001144766 NM_003315
Genomic and cartography
GoldenPath (UCSC)DNAJC7  -  17q21.2   chr17:40128439-40169183 -  17q21.2   [Description]    (hg19-Feb_2009)
EnsemblDNAJC7 - 17q21.2 [CytoView]
Mapping of homologs : NCBIDNAJC7 [Mapview]
OMIM601964   
Gene and transcription
Genbank (Entrez)AB209834 AK291047 AK296602 AK298860 AK308016
RefSeq transcript (Entrez)NM_001144766 NM_003315
RefSeq genomic (Entrez)AC_000149 NC_000017 NC_018928 NT_010783 NW_001838436 NW_004929407
Consensus coding sequences : CCDS (NCBI)DNAJC7
Cluster EST : UnigeneHs.500156 [ NCBI ]
CGAP (NCI)Hs.500156
Alternative Splicing : Fast-db (Paris)GSHG0013409
Alternative Splicing GalleryENSG00000168259
Gene ExpressionDNAJC7 [ NCBI-GEO ]     DNAJC7 [ SEEK ]   DNAJC7 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99615 (Uniprot)
NextProtQ99615  [Medical]
With graphics : InterProQ99615
Splice isoforms : SwissVarQ99615 (Swissvar)
Domaine pattern : Prosite (Expaxy)DNAJ_2 (PS50076)    TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (EBI)DnaJ_domain [organisation]   TPR-contain_dom [organisation]   TPR-like_helical [organisation]   TPR_1 [organisation]   TPR_2 [organisation]   TPR_repeat [organisation]  
Related proteins : CluSTrQ99615
Domain families : Pfam (Sanger)DnaJ (PF00226)    TPR_1 (PF00515)    TPR_2 (PF07719)   
Domain families : Pfam (NCBI)pfam00226    pfam00515    pfam07719   
Domain families : Smart (EMBL)DnaJ (SM00271)  TPR (SM00028)  
DMDM Disease mutations7266
Blocks (Seattle)Q99615
Human Protein AtlasENSG00000168259 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasQ99615
IPIIPI00329629   IPI00794610   
Protein Interaction databases
DIP (DOE-UCLA)Q99615
IntAct (EBI)Q99615
FunCoupENSG00000168259
BioGRIDDNAJC7
InParanoidQ99615
Interologous Interaction database Q99615
IntegromeDBDNAJC7
STRING (EMBL)DNAJC7
Ontologies - Pathways
Ontology : AmiGOprotein binding  nucleus  nucleolus  cytoplasm  cytoskeleton  protein folding  membrane  heat shock protein binding  extracellular vesicular exosome  chaperone cofactor-dependent protein refolding  
Ontology : EGO-EBIprotein binding  nucleus  nucleolus  cytoplasm  cytoskeleton  protein folding  membrane  heat shock protein binding  extracellular vesicular exosome  chaperone cofactor-dependent protein refolding  
Protein Interaction DatabaseDNAJC7
Wikipedia pathwaysDNAJC7
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)DNAJC7
snp3D : Map Gene to Disease7266
SNP (GeneSNP Utah)DNAJC7
SNP : HGBaseDNAJC7
Genetic variants : HAPMAPDNAJC7
Exome VariantDNAJC7
1000_GenomesDNAJC7 
ICGC programENSG00000168259 
Somatic Mutations in Cancer : COSMICDNAJC7 
CONAN: Copy Number AnalysisDNAJC7 
Mutations and Diseases : HGMDDNAJC7
Mutations and Diseases : intOGenDNAJC7
Genomic VariantsDNAJC7  DNAJC7 [DGVbeta]
dbVarDNAJC7
ClinVarDNAJC7
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM601964   
MedgenDNAJC7
GENETestsDNAJC7
Disease Genetic AssociationDNAJC7
Huge Navigator DNAJC7 [HugePedia]  DNAJC7 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneDNAJC7
Homology/Alignments : Family Browser (UCSC)DNAJC7
Phylogenetic Trees/Animal Genes : TreeFamDNAJC7
Chemical/Protein Interactions : CTD7266
Chemical/Pharm GKB GenePA27424
Clinical trialDNAJC7
Cancer Resource (Charite)ENSG00000168259
Other databases
Probes
Litterature
PubMed43 Pubmed reference(s) in Entrez
CoreMineDNAJC7
iHOPDNAJC7
OncoSearchDNAJC7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 26 16:44:47 CEST 2014

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