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Taking over the Atlas
Dear Colleagues,
The Atlas, once more, is in great danger, and I will have to proceed to a collective economic lay-off of all the team involved in the Atlas before the begining of April 2015 (a foundation having suddenly withdrawn its commitment to support the Atlas). I ask you herein if any Scientific Society (a Society of Cytogenetics, of Clinical Genetics, of Hematology, or a Cancer Society, or any other...), any University and/or Hospital, any Charity, or any database would be interested in taking over the Atlas, in whole or in part. If taking charge of the whole lot is too big, a consortium of various actors could be the solution (I am myself trying to find partners). Could you please spread the information, contact the relevant authorities, and find partners.
Survival of the Atlas will be critically dependant upon your ability to find solutions (and urgently!).
Kind regards.
Jean-Loup Huret jlhuret@AtlasGeneticsOncology.org
Donations are also welcome
If each casual visitor gives 3 Euros or Dollars, the Atlas is saved in a week !
If each professional gives 100 Euros or Dollars once a year (now), the Atlas is saved in 2 weeks !
Don't let the Atlas imminent demise
Note: we send fiscal receipts for donations equal or above 50 Euros or Dollars

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DNAJC7 (DnaJ (Hsp40) homolog, subfamily C, member 7)

Identity

Other namesDJ11
DJC7
TPR2
TTC2
HGNC (Hugo) DNAJC7
LocusID (NCBI) 7266
Location 17q21.2
Location_base_pair Starts at 40128439 and ends at 40169183 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)DNAJC7   12392
Cards
Entrez_Gene (NCBI)DNAJC7  7266  DnaJ (Hsp40) homolog, subfamily C, member 7
GeneCards (Weizmann)DNAJC7
Ensembl hg19 (Hinxton)ENSG00000168259 [Gene_View]  chr17:40128439-40169183 [Contig_View]  DNAJC7 [Vega]
Ensembl hg38 (Hinxton)ENSG00000168259 [Gene_View]  chr17:40128439-40169183 [Contig_View]  DNAJC7 [Vega]
ICGC DataPortalENSG00000168259
cBioPortalDNAJC7
AceView (NCBI)DNAJC7
Genatlas (Paris)DNAJC7
WikiGenes7266
SOURCE (Princeton)DNAJC7
Genomic and cartography
GoldenPath hg19 (UCSC)DNAJC7  -     chr17:40128439-40169183 -  17q21.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)DNAJC7  -     17q21.2   [Description]    (hg38-Dec_2013)
EnsemblDNAJC7 - 17q21.2 [CytoView hg19]  DNAJC7 - 17q21.2 [CytoView hg38]
Mapping of homologs : NCBIDNAJC7 [Mapview hg19]  DNAJC7 [Mapview hg38]
OMIM601964   
Gene and transcription
Genbank (Entrez)AB209834 AK291047 AK296602 AK298860 AK308016
RefSeq transcript (Entrez)NM_001144766 NM_003315
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010783 NW_004929407
Consensus coding sequences : CCDS (NCBI)DNAJC7
Cluster EST : UnigeneHs.500156 [ NCBI ]
CGAP (NCI)Hs.500156
Alternative Splicing : Fast-db (Paris)GSHG0013409
Alternative Splicing GalleryENSG00000168259
Gene ExpressionDNAJC7 [ NCBI-GEO ]     DNAJC7 [ SEEK ]   DNAJC7 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99615 (Uniprot)
NextProtQ99615  [Medical]
With graphics : InterProQ99615
Splice isoforms : SwissVarQ99615 (Swissvar)
Domaine pattern : Prosite (Expaxy)DNAJ_2 (PS50076)    TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (EBI)DnaJ_domain    TPR-contain_dom    TPR-like_helical_dom    TPR_1    TPR_2    TPR_repeat   
Related proteins : CluSTrQ99615
Domain families : Pfam (Sanger)DnaJ (PF00226)    TPR_1 (PF00515)    TPR_2 (PF07719)   
Domain families : Pfam (NCBI)pfam00226    pfam00515    pfam07719   
Domain families : Smart (EMBL)DnaJ (SM00271)  TPR (SM00028)  
DMDM Disease mutations7266
Blocks (Seattle)Q99615
Human Protein AtlasENSG00000168259
Peptide AtlasQ99615
IPIIPI00329629   IPI00794610   
Protein Interaction databases
DIP (DOE-UCLA)Q99615
IntAct (EBI)Q99615
FunCoupENSG00000168259
BioGRIDDNAJC7
IntegromeDBDNAJC7
STRING (EMBL)DNAJC7
Ontologies - Pathways
QuickGOQ99615
Ontology : AmiGOprotein binding  nucleoplasm  cytoplasm  cytoskeleton  protein folding  membrane  heat shock protein binding  extracellular exosome  chaperone cofactor-dependent protein refolding  
Ontology : EGO-EBIprotein binding  nucleoplasm  cytoplasm  cytoskeleton  protein folding  membrane  heat shock protein binding  extracellular exosome  chaperone cofactor-dependent protein refolding  
Protein Interaction DatabaseDNAJC7
DoCM (Curated mutations)DNAJC7
Wikipedia pathwaysDNAJC7
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerDNAJC7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DNAJC7
dbVarDNAJC7
ClinVarDNAJC7
1000_GenomesDNAJC7 
Exome Variant ServerDNAJC7
SNP (GeneSNP Utah)DNAJC7
SNP : HGBaseDNAJC7
Genetic variants : HAPMAPDNAJC7
Genomic Variants (DGV)DNAJC7 [DGVbeta]
Mutations
ICGC Data PortalENSG00000168259 
Somatic Mutations in Cancer : COSMICDNAJC7 
CONAN: Copy Number AnalysisDNAJC7 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)17:40128439-40169183
Mutations and Diseases : HGMDDNAJC7
OMIM601964   
MedgenDNAJC7
NextProtQ99615 [Medical]
GENETestsDNAJC7
Disease Genetic AssociationDNAJC7
Huge Navigator DNAJC7 [HugePedia]  DNAJC7 [HugeCancerGEM]
snp3D : Map Gene to Disease7266
DGIdb (Drug Gene Interaction db)DNAJC7
General knowledge
Homologs : HomoloGeneDNAJC7
Homology/Alignments : Family Browser (UCSC)DNAJC7
Phylogenetic Trees/Animal Genes : TreeFamDNAJC7
Chemical/Protein Interactions : CTD7266
Chemical/Pharm GKB GenePA27424
Clinical trialDNAJC7
Cancer Resource (Charite)ENSG00000168259
Other databases
Probes
Litterature
PubMed47 Pubmed reference(s) in Entrez
CoreMineDNAJC7
GoPubMedDNAJC7
iHOPDNAJC7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated02-2015Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Mar 28 15:13:57 CET 2015

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For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.