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DNAJC7 (DnaJ heat shock protein family (Hsp40) member C7)

Identity

Other namesDJ11
DJC7
TPR2
TTC2
HGNC (Hugo) DNAJC7
LocusID (NCBI) 7266
Atlas_Id 47420
Location 17q21.2
Location_base_pair Starts at 40128439 and ends at 40169183 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2015)
ACLY 17q21.2 / DNAJC7 17q21.2FYTTD1 3q29 / DNAJC7 17q21.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DNAJC7   12392
Cards
Entrez_Gene (NCBI)DNAJC7  7266  DnaJ heat shock protein family (Hsp40) member C7
GeneCards (Weizmann)DNAJC7
Ensembl hg19 (Hinxton)ENSG00000168259 [Gene_View]  chr17:40128439-40169183 [Contig_View]  DNAJC7 [Vega]
Ensembl hg38 (Hinxton)ENSG00000168259 [Gene_View]  chr17:40128439-40169183 [Contig_View]  DNAJC7 [Vega]
ICGC DataPortalENSG00000168259
TCGA cBioPortalDNAJC7
AceView (NCBI)DNAJC7
Genatlas (Paris)DNAJC7
WikiGenes7266
SOURCE (Princeton)DNAJC7
Genomic and cartography
GoldenPath hg19 (UCSC)DNAJC7  -     chr17:40128439-40169183 -  17q21.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)DNAJC7  -     17q21.2   [Description]    (hg38-Dec_2013)
EnsemblDNAJC7 - 17q21.2 [CytoView hg19]  DNAJC7 - 17q21.2 [CytoView hg38]
Mapping of homologs : NCBIDNAJC7 [Mapview hg19]  DNAJC7 [Mapview hg38]
OMIM601964   
Gene and transcription
Genbank (Entrez)AB209834 AK291047 AK296602 AK298860 AK308016
RefSeq transcript (Entrez)NM_001144766 NM_003315
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010783 NW_004929407
Consensus coding sequences : CCDS (NCBI)DNAJC7
Cluster EST : UnigeneHs.500156 [ NCBI ]
CGAP (NCI)Hs.500156
Alternative Splicing : Fast-db (Paris)GSHG0013409
Alternative Splicing GalleryENSG00000168259
Gene ExpressionDNAJC7 [ NCBI-GEO ]     DNAJC7 [ SEEK ]   DNAJC7 [ MEM ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)7266
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99615 (Uniprot)
NextProtQ99615  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ99615
Splice isoforms : SwissVarQ99615 (Swissvar)
PhosPhoSitePlusQ99615
Domaine pattern : Prosite (Expaxy)DNAJ_2 (PS50076)    TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (EBI)DnaJ_domain    TPR-contain_dom    TPR-like_helical_dom    TPR_1    TPR_2    TPR_repeat   
Domain families : Pfam (Sanger)DnaJ (PF00226)    TPR_1 (PF00515)    TPR_2 (PF07719)   
Domain families : Pfam (NCBI)pfam00226    pfam00515    pfam07719   
Domain families : Smart (EMBL)DnaJ (SM00271)  TPR (SM00028)  
DMDM Disease mutations7266
Blocks (Seattle)DNAJC7
Human Protein AtlasENSG00000168259
Peptide AtlasQ99615
IPIIPI00329629   IPI00794610   
Protein Interaction databases
DIP (DOE-UCLA)Q99615
IntAct (EBI)Q99615
FunCoupENSG00000168259
BioGRIDDNAJC7
IntegromeDBDNAJC7
STRING (EMBL)DNAJC7
ZODIACDNAJC7
Ontologies - Pathways
QuickGOQ99615
Ontology : AmiGOprotein binding  nucleoplasm  nucleoplasm  cytoplasm  cytosol  cytoskeleton  protein folding  membrane  heat shock protein binding  cellular response to heat  extracellular exosome  chaperone cofactor-dependent protein refolding  regulation of cellular response to heat  
Ontology : EGO-EBIprotein binding  nucleoplasm  nucleoplasm  cytoplasm  cytosol  cytoskeleton  protein folding  membrane  heat shock protein binding  cellular response to heat  extracellular exosome  chaperone cofactor-dependent protein refolding  regulation of cellular response to heat  
Protein Interaction DatabaseDNAJC7
Atlas of Cancer Signalling NetworkDNAJC7
Wikipedia pathwaysDNAJC7
Orthology - Evolution
OrthoDB7266
GeneTree (enSembl)ENSG00000168259
Phylogenetic Trees/Animal Genes : TreeFamDNAJC7
Homologs : HomoloGeneDNAJC7
Homology/Alignments : Family Browser (UCSC)DNAJC7
Gene fusions - Rearrangements
Fusion: TCGAACLY 17q21.2 DNAJC7 17q21.2 BRCA
Fusion: TCGAFYTTD1 3q29 DNAJC7 17q21.2 LUAD
Polymorphisms : SNP, variants
NCBI Variation ViewerDNAJC7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DNAJC7
dbVarDNAJC7
ClinVarDNAJC7
1000_GenomesDNAJC7 
Exome Variant ServerDNAJC7
Exome Aggregation Consortium (ExAC)ENSG00000168259
SNP (GeneSNP Utah)DNAJC7
SNP : HGBaseDNAJC7
Genetic variants : HAPMAPDNAJC7
Genomic Variants (DGV)DNAJC7 [DGVbeta]
Mutations
ICGC Data PortalDNAJC7 
TCGA Data PortalDNAJC7 
Tumor PortalDNAJC7
TCGA Copy Number PortalDNAJC7
Somatic Mutations in Cancer : COSMICDNAJC7 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DNAJC7
DgiDB (Drug Gene Interaction Database)DNAJC7
DoCM (Curated mutations)DNAJC7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DNAJC7 (select a term)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)17:40128439-40169183
CONAN: Copy Number AnalysisDNAJC7 
Mutations and Diseases : HGMDDNAJC7
OMIM601964   
MedgenDNAJC7
NextProtQ99615 [Medical]
TSGene7266
GENETestsDNAJC7
Huge Navigator DNAJC7 [HugePedia]  DNAJC7 [HugeCancerGEM]
snp3D : Map Gene to Disease7266
BioCentury BCIQDNAJC7
General knowledge
Chemical/Protein Interactions : CTD7266
Chemical/Pharm GKB GenePA27424
Clinical trialDNAJC7
Other databases
Probes
Litterature
PubMed45 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDNAJC7
GoPubMedDNAJC7
iHOPDNAJC7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Jan 16 18:29:50 CET 2016

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