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DOP1B (DOP1 leucine zipper like protein B)

Identity

Other alias21orf5
C21orf5
DOPEY2
HGNC (Hugo) DOP1B
LocusID (NCBI) 9980
Atlas_Id 80507
Location 21q22.12  [Link to chromosome band 21q22]
Location_base_pair Starts at 36164541 and ends at 36294274 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)DOP1B   1291
Cards
Entrez_Gene (NCBI)DOP1B  9980  DOP1 leucine zipper like protein B
Aliases21orf5; C21orf5; DOPEY2
GeneCards (Weizmann)DOP1B
Ensembl hg19 (Hinxton)ENSG00000142197 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000142197 [Gene_View]  ENSG00000142197 [Sequence]  chr21:36164541-36294274 [Contig_View]  DOP1B [Vega]
ICGC DataPortalENSG00000142197
TCGA cBioPortalDOP1B
AceView (NCBI)DOP1B
Genatlas (Paris)DOP1B
WikiGenes9980
SOURCE (Princeton)DOP1B
Genetics Home Reference (NIH)DOP1B
Genomic and cartography
GoldenPath hg38 (UCSC)DOP1B  -     chr21:36164541-36294274 +  21q22.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DOP1B  -     21q22.12   [Description]    (hg19-Feb_2009)
GoldenPathDOP1B - 21q22.12 [CytoView hg19]  DOP1B - 21q22.12 [CytoView hg38]
ImmunoBaseENSG00000142197
Mapping of homologs : NCBIDOP1B [Mapview hg19]  DOP1B [Mapview hg38]
OMIM604803   
Gene and transcription
Genbank (Entrez)AB023150 AJ001857 AJ237839 AK025095 AK026478
RefSeq transcript (Entrez)NM_001320714 NM_005128
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DOP1B
Cluster EST : UnigeneHs.204575 [ NCBI ]
CGAP (NCI)Hs.204575
Alternative Splicing GalleryENSG00000142197
Gene ExpressionDOP1B [ NCBI-GEO ]   DOP1B [ EBI - ARRAY_EXPRESS ]   DOP1B [ SEEK ]   DOP1B [ MEM ]
Gene Expression Viewer (FireBrowse)DOP1B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9980
GTEX Portal (Tissue expression)DOP1B
Human Protein AtlasENSG00000142197-DOP1B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y3R5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y3R5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y3R5
Splice isoforms : SwissVarQ9Y3R5
PhosPhoSitePlusQ9Y3R5
Domains : Interpro (EBI)Dopey_N   
Domain families : Pfam (Sanger)Dopey_N (PF04118)   
Domain families : Pfam (NCBI)pfam04118   
Conserved Domain (NCBI)DOP1B
DMDM Disease mutations9980
Blocks (Seattle)DOP1B
SuperfamilyQ9Y3R5
Human Protein Atlas [tissue]ENSG00000142197-DOP1B [tissue]
Peptide AtlasQ9Y3R5
IPIIPI00294653   IPI00796463   IPI01024977   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y3R5
IntAct (EBI)Q9Y3R5
FunCoupENSG00000142197
BioGRIDDOP1B
STRING (EMBL)DOP1B
ZODIACDOP1B
Ontologies - Pathways
QuickGOQ9Y3R5
Ontology : AmiGOGolgi membrane  molecular_function  endosome  trans-Golgi network  cytosol  Golgi to endosome transport  endoplasmic reticulum organization  multicellular organism development  protein transport  cognition  extracellular exosome  
Ontology : EGO-EBIGolgi membrane  molecular_function  endosome  trans-Golgi network  cytosol  Golgi to endosome transport  endoplasmic reticulum organization  multicellular organism development  protein transport  cognition  extracellular exosome  
NDEx NetworkDOP1B
Atlas of Cancer Signalling NetworkDOP1B
Wikipedia pathwaysDOP1B
Orthology - Evolution
OrthoDB9980
GeneTree (enSembl)ENSG00000142197
Phylogenetic Trees/Animal Genes : TreeFamDOP1B
HOGENOMQ9Y3R5
Homologs : HomoloGeneDOP1B
Homology/Alignments : Family Browser (UCSC)DOP1B
Gene fusions - Rearrangements
Fusion : QuiverDOP1B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDOP1B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DOP1B
dbVarDOP1B
ClinVarDOP1B
1000_GenomesDOP1B 
Exome Variant ServerDOP1B
ExAC (Exome Aggregation Consortium)ENSG00000142197
GNOMAD BrowserENSG00000142197
Varsome BrowserDOP1B
Genetic variants : HAPMAP9980
Genomic Variants (DGV)DOP1B [DGVbeta]
DECIPHERDOP1B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDOP1B 
Mutations
ICGC Data PortalDOP1B 
TCGA Data PortalDOP1B 
Broad Tumor PortalDOP1B
OASIS PortalDOP1B [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDDOP1B
BioMutasearch DOP1B
DgiDB (Drug Gene Interaction Database)DOP1B
DoCM (Curated mutations)DOP1B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DOP1B (select a term)
intoGenDOP1B
Cancer3DDOP1B(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604803   
Orphanet
DisGeNETDOP1B
MedgenDOP1B
Genetic Testing Registry DOP1B
NextProtQ9Y3R5 [Medical]
TSGene9980
GENETestsDOP1B
Target ValidationDOP1B
Huge Navigator DOP1B [HugePedia]
snp3D : Map Gene to Disease9980
BioCentury BCIQDOP1B
ClinGenDOP1B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9980
Chemical/Pharm GKB GenePA25845
Clinical trialDOP1B
Miscellaneous
canSAR (ICR)DOP1B (select the gene name)
DataMed IndexDOP1B
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDOP1B
EVEXDOP1B
GoPubMedDOP1B
iHOPDOP1B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 15:26:06 CEST 2019

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