Atlas of Genetics and Cytogenetics in Oncology and Haematology

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DPPA3 (developmental pluripotency associated 3)

Identity

Other namesSTELLA
HGNC (Hugo) DPPA3
LocusID (NCBI) 359787
Location 12p13.31
Location_base_pair Starts at 7864089 and ends at 7870152 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)DPPA3   19199
Entrez_Gene (NCBI)DPPA3  359787  developmental pluripotency associated 3
Cards
GeneCards (Weizmann)DPPA3
Ensembl (Hinxton)ENSG00000187569 [Gene_View]  chr12:7864089-7870152 [Contig_View]  DPPA3 [Vega]
AceView (NCBI)DPPA3
Genatlas (Paris)DPPA3
SOURCE (Stanford)NM_199286
Genomic and cartography
GoldenPath (UCSC)DPPA3  -  12p13.31   chr12:7864089-7870152 +  12p13.31   [Description]    (hg19-Feb_2009)
EnsemblDPPA3 - 12p13.31 [CytoView]
Mapping of homologs : NCBIDPPA3 [Mapview]
OMIM608408   
Gene and transcription
Genbank (Entrez)AY317075 BC160067
RefSeq transcript (SRS)NM_199286
RefSeq transcript (Entrez)NM_199286
RefSeq genomic (SRS)AC_000144 NC_000012 NC_018923 NT_009714 NW_001838051 NW_004078074
RefSeq genomic (Entrez)AC_000144 NC_000012 NC_018923 NT_009714 NW_001838051 NW_004078074
Consensus coding sequences : CCDS (NCBI)DPPA3
Cluster EST : UnigeneHs.131358 [ SRS ] Hs.131358 [ NCBI ]
CGAP (NCI)Hs.131358
Alternative Splicing : Fast-db (Paris)GSHG0006438
Alternative Splicing GalleryENSG00000187569
Gene ExpressionDPPA3 [ NCBI-GEO ]   DPPA3 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6W0C5 (SRS) Q6W0C5 (Uniprot)
NextProtQ6W0C5
With graphics : InterProQ6W0C5
Splice isoforms : SwissVarQ6W0C5(Swissvar)
Related proteins : CluSTrQ6W0C5
Domain families : Pfam (SRS)
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
DMDM359787
Blocks (Seattle)Q6W0C5
Human Protein AtlasENSG00000187569
HPRD16331
IPIIPI00241801   IPI00419228   
Protein Interaction databases
DIP (DOE-UCLA)Q6W0C5
IntAct (EBI)Q6W0C5
FunCoupENSG00000187569
REACTOMEDPPA3
Protein Interaction Database359787
BioGRIDDPPA3
InParanoidQ6W0C5
Interologous Interaction database Q6W0C5
IntegromeDBDPPA3
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)DPPA3
SNP (GeneSNP Utah)DPPA3
SNP : HGBaseDPPA3
Genetic variants : HAPMAPDPPA3
Somatic Mutations in Cancer : COSMICDPPA3 
CONAN: Copy Number AnalysisDPPA3 
Mutations and Diseases : HGMDDPPA3
OMIM608408   
GENETests608408   
Disease Genetic AssociationDPPA3
Huge Navigator DPPA3 [HugePedia]  DPPA3 [HugeCancerGEM]
Genomic VariantsDPPA3  DPPA3 [DGVbeta]
snp3D : Map Gene to Disease359787
General knowledge
Homologs : HomoloGeneDPPA3
Homology/Alignments : Family Browser (UCSC)DPPA3
Phylogenetic Trees/Animal Genes : TreeFamDPPA3
Chemical/Protein Interactions : CTD359787
Chemical/Pharm GKB GenePA134951641
Clinical trialDPPA3
Cancer Resource (Charite)ENSG00000187569
Ontology : AmiGOfemale pronucleus  male pronucleus  nucleus  cytoplasm  chromatin modification  methylated histone residue binding  embryonic cleavage  protection of DNA demethylation of female pronucleus  negative regulation of DNA demethylation  regulation of genetic imprinting  
Ontology : EGO-EBIfemale pronucleus  male pronucleus  nucleus  cytoplasm  chromatin modification  methylated histone residue binding  embryonic cleavage  protection of DNA demethylation of female pronucleus  negative regulation of DNA demethylation  regulation of genetic imprinting  
Other databases
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
PubGeneDPPA3
iHOPDPPA3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:38:24 CEST 2013
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