DSCAM (DS cell adhesion molecule)

2014-11-01  

Identity

HGNC
DSCAM
LOCATION
21q22.2
LOCUSID
1826
ALIAS
CHD2,CHD2-42,CHD2-52
FUSION GENES
Show Gene Fusions

Other Information

Locus ID:

NCBI: 1826
MIM: 602523
HGNC: 3039
Ensembl: ENSG00000171587

Variants:

dbSNP: 1826
ClinVar: 1826
TCGA: ENSG00000171587
COSMIC: DSCAM

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000171587ENST00000400454O60469
ENSG00000171587ENST00000404019Q8WY19
ENSG00000171587ENST00000617870A0A087WUI7

Expression (GTEx)

0
1
2
3
4
5
6
7
8
9
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

Pathways

PathwaySourceExternal ID
Cell-Cell communicationREACTOMER-HSA-1500931
DSCAM interactionsREACTOMER-HSA-376172

Protein levels (Protein atlas)

Not detected
Low
Medium
High
cerebral cortex
cerebellum
hippocampus
caudate
thyroid gland
parathyroid gland
adrenal gland
nasopharynx
bronchus
lung
oral mucosa
salivary gland
esophagus
stomach 1
stomach 2
duodenum
small intestine
colon
rectum
liver
gallbladder
pancreas
kidney
urinary bladder
testis
epididymis
seminal vesicle
prostate
vagina
ovary
fallopian tube
endometrium 1
endometrium 2
cervix, uterine
placenta
breast
heart muscle
smooth muscle
skeletal muscle
soft tissue 1
soft tissue 2
adipose tissue
skin 1
skin 2
appendix
spleen
lymph node
tonsil
bone marrow

PharmGKB

Entity IDNameTypeEvidenceAssociationPKPDPMIDs
PA443622Carcinoma, Non-Small-Cell LungDiseaseClinicalAnnotationassociatedPD21079520
PA445062NeoplasmsDiseaseClinicalAnnotationassociatedPD21079520
PA448803carboplatinChemicalClinicalAnnotationassociatedPD21079520
PA450761paclitaxelChemicalClinicalAnnotationassociatedPD21079520

References

Pubmed IDYearTitleCitations
185198262008Molecular genetics of successful smoking cessation: convergent genome-wide association study results.130
199453912009DSCAM and DSCAML1 function in self-avoidance in multiple cell types in the developing mouse retina.118
191969942009DSCAM functions as a netrin receptor in commissural axon pathfinding.76
192400612009Coeliac disease-associated risk variants in TNFAIP3 and REL implicate altered NF-kappaB signalling.75
177215082007Structural basis of Dscam isoform specificity.66
203796142010Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score.62
192118972009Endodomain diversity in the Drosophila Dscam and its roles in neuronal morphogenesis.19
226853022012Down syndrome cell adhesion molecule (DSCAM) associates with uncoordinated-5C (UNC5C) in netrin-1-mediated growth cone collapse.18
258679942015An analysis of gene expression in PTSD implicates genes involved in the glucocorticoid receptor pathway and neural responses to stress.18
210795202011Genome-wide association study on overall survival of advanced non-small cell lung cancer patients treated with carboplatin and paclitaxel.16

Citation

Dessen P

DSCAM (DS cell adhesion molecule)

Atlas Genet Cytogenet Oncol Haematol. 2014-11-01

Online version: http://atlasgeneticsoncology.org/gene/62647/dscam