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DTWD1 (DTW domain containing 1)

Identity

Alias_symbol (synonym)MDS009
MGC111207
Other alias
HGNC (Hugo) DTWD1
LocusID (NCBI) 56986
Atlas_Id 46635
Location 15q21.2  [Link to chromosome band 15q21]
Location_base_pair Starts at 49621029 and ends at 49645136 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
DTWD1 (15q21.2) / DTWD1 (15q21.2)DTWD1 (15q21.2) / FAM227B (15q21.2)DTWD1 15q21.2 C15orf33

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  DTWD1/FAM227B (15q21)

External links

Nomenclature
HGNC (Hugo)DTWD1   30926
Cards
Entrez_Gene (NCBI)DTWD1  56986  DTW domain containing 1
AliasesMDS009
GeneCards (Weizmann)DTWD1
Ensembl hg19 (Hinxton)ENSG00000104047 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000104047 [Gene_View]  ENSG00000104047 [Sequence]  chr15:49621029-49645136 [Contig_View]  DTWD1 [Vega]
ICGC DataPortalENSG00000104047
TCGA cBioPortalDTWD1
AceView (NCBI)DTWD1
Genatlas (Paris)DTWD1
WikiGenes56986
SOURCE (Princeton)DTWD1
Genetics Home Reference (NIH)DTWD1
Genomic and cartography
GoldenPath hg38 (UCSC)DTWD1  -     chr15:49621029-49645136 +  15q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DTWD1  -     15q21.2   [Description]    (hg19-Feb_2009)
GoldenPathDTWD1 - 15q21.2 [CytoView hg19]  DTWD1 - 15q21.2 [CytoView hg38]
ImmunoBaseENSG00000104047
Mapping of homologs : NCBIDTWD1 [Mapview hg19]  DTWD1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF168717 AK125405 AK290184 BC018028 BC032535
RefSeq transcript (Entrez)NM_001144955 NM_020234
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DTWD1
Cluster EST : UnigeneHs.594784 [ NCBI ]
CGAP (NCI)Hs.594784
Alternative Splicing GalleryENSG00000104047
Gene ExpressionDTWD1 [ NCBI-GEO ]   DTWD1 [ EBI - ARRAY_EXPRESS ]   DTWD1 [ SEEK ]   DTWD1 [ MEM ]
Gene Expression Viewer (FireBrowse)DTWD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56986
GTEX Portal (Tissue expression)DTWD1
Human Protein AtlasENSG00000104047-DTWD1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N5C7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N5C7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N5C7
Splice isoforms : SwissVarQ8N5C7
PhosPhoSitePlusQ8N5C7
Domains : Interpro (EBI)DTW   
Domain families : Pfam (Sanger)DTW (PF03942)   
Domain families : Pfam (NCBI)pfam03942   
Domain families : Smart (EMBL)DTW (SM01144)  
Conserved Domain (NCBI)DTWD1
DMDM Disease mutations56986
Blocks (Seattle)DTWD1
SuperfamilyQ8N5C7
Human Protein Atlas [tissue]ENSG00000104047-DTWD1 [tissue]
Peptide AtlasQ8N5C7
HPRD17474
IPIIPI00328939   IPI00869117   IPI00103123   
Protein Interaction databases
DIP (DOE-UCLA)Q8N5C7
IntAct (EBI)Q8N5C7
FunCoupENSG00000104047
BioGRIDDTWD1
STRING (EMBL)DTWD1
ZODIACDTWD1
Ontologies - Pathways
QuickGOQ8N5C7
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkDTWD1
Atlas of Cancer Signalling NetworkDTWD1
Wikipedia pathwaysDTWD1
Orthology - Evolution
OrthoDB56986
GeneTree (enSembl)ENSG00000104047
Phylogenetic Trees/Animal Genes : TreeFamDTWD1
HOGENOMQ8N5C7
Homologs : HomoloGeneDTWD1
Homology/Alignments : Family Browser (UCSC)DTWD1
Gene fusions - Rearrangements
Fusion : MitelmanDTWD1/FAM227B [15q21.2/15q21.2]  
Fusion PortalDTWD1 15q21.2 C15orf33 BRCA
Fusion : QuiverDTWD1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDTWD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DTWD1
dbVarDTWD1
ClinVarDTWD1
1000_GenomesDTWD1 
Exome Variant ServerDTWD1
ExAC (Exome Aggregation Consortium)ENSG00000104047
GNOMAD BrowserENSG00000104047
Varsome BrowserDTWD1
Genetic variants : HAPMAP56986
Genomic Variants (DGV)DTWD1 [DGVbeta]
DECIPHERDTWD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDTWD1 
Mutations
ICGC Data PortalDTWD1 
TCGA Data PortalDTWD1 
Broad Tumor PortalDTWD1
OASIS PortalDTWD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDTWD1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DDTWD1
Mutations and Diseases : HGMDDTWD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DTWD1
DgiDB (Drug Gene Interaction Database)DTWD1
DoCM (Curated mutations)DTWD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DTWD1 (select a term)
intoGenDTWD1
Cancer3DDTWD1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETDTWD1
MedgenDTWD1
Genetic Testing Registry DTWD1
NextProtQ8N5C7 [Medical]
TSGene56986
GENETestsDTWD1
Target ValidationDTWD1
Huge Navigator DTWD1 [HugePedia]
snp3D : Map Gene to Disease56986
BioCentury BCIQDTWD1
ClinGenDTWD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56986
Chemical/Pharm GKB GenePA142671942
Clinical trialDTWD1
Miscellaneous
canSAR (ICR)DTWD1 (select the gene name)
DataMed IndexDTWD1
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDTWD1
EVEXDTWD1
GoPubMedDTWD1
iHOPDTWD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Nov 13 17:41:08 CET 2019
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