Atlas of Genetics and Cytogenetics in Oncology and Haematology

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DZIP1 (DAZ interacting zinc finger protein 1)

Identity

Alias_namesDAZ interacting protein 1
Alias_symbol (synonym)KIAA0996
DZIP
Other aliasDZIPt1
HGNC (Hugo) DZIP1
LocusID (NCBI) 22873
Atlas_Id 56926
Location 13q32.1  [Link to chromosome band 13q32]
Location_base_pair Starts at 95578202 and ends at 95644706 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ABCC4 (13q32.1) / DZIP1 (13q32.1)DZIP1 (13q32.1) / DZIP1 (13q32.1)DZIP1 (13q32.1) / PCCA (13q32.3)
DZIP1 (13q32.1) / PKP4 (2q24.1)STX5 (11q12.3) / DZIP1 (13q32.1)YWHAB (20q13.12) / DZIP1 (13q32.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 2 ]
  DZIP1/PCCA (13q32)
GPR180/DZIP1 (13q32)

External links

Nomenclature
HGNC (Hugo)DZIP1   20908
Cards
Entrez_Gene (NCBI)DZIP1  22873  DAZ interacting zinc finger protein 1
AliasesDZIP; DZIPt1
GeneCards (Weizmann)DZIP1
Ensembl hg19 (Hinxton)ENSG00000134874 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000134874 [Gene_View]  ENSG00000134874 [Sequence]  chr13:95578202-95644706 [Contig_View]  DZIP1 [Vega]
ICGC DataPortalENSG00000134874
TCGA cBioPortalDZIP1
AceView (NCBI)DZIP1
Genatlas (Paris)DZIP1
WikiGenes22873
SOURCE (Princeton)DZIP1
Genetics Home Reference (NIH)DZIP1
Genomic and cartography
GoldenPath hg38 (UCSC)DZIP1  -     chr13:95578202-95644706 -  13q32.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DZIP1  -     13q32.1   [Description]    (hg19-Feb_2009)
GoldenPathDZIP1 - 13q32.1 [CytoView hg19]  DZIP1 - 13q32.1 [CytoView hg38]
ImmunoBaseENSG00000134874
Mapping of homologs : NCBIDZIP1 [Mapview hg19]  DZIP1 [Mapview hg38]
OMIM608671   
Gene and transcription
Genbank (Entrez)AB023213 AF272347 AF272348 AF339791 AI470938
RefSeq transcript (Entrez)NM_014934 NM_198968
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DZIP1
Cluster EST : UnigeneHs.742077 [ NCBI ]
CGAP (NCI)Hs.742077
Alternative Splicing GalleryENSG00000134874
Gene ExpressionDZIP1 [ NCBI-GEO ]   DZIP1 [ EBI - ARRAY_EXPRESS ]   DZIP1 [ SEEK ]   DZIP1 [ MEM ]
Gene Expression Viewer (FireBrowse)DZIP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)22873
GTEX Portal (Tissue expression)DZIP1
Human Protein AtlasENSG00000134874-DZIP1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86YF9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86YF9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86YF9
Splice isoforms : SwissVarQ86YF9
PhosPhoSitePlusQ86YF9
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)DZIP1_N    Znf_C2H2_type   
Domain families : Pfam (Sanger)Dzip-like_N (PF13815)   
Domain families : Pfam (NCBI)pfam13815   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)DZIP1
DMDM Disease mutations22873
Blocks (Seattle)DZIP1
SuperfamilyQ86YF9
Human Protein Atlas [tissue]ENSG00000134874-DZIP1 [tissue]
Peptide AtlasQ86YF9
IPIIPI00452091   IPI00452092   IPI00452093   
Protein Interaction databases
DIP (DOE-UCLA)Q86YF9
IntAct (EBI)Q86YF9
FunCoupENSG00000134874
BioGRIDDZIP1
STRING (EMBL)DZIP1
ZODIACDZIP1
Ontologies - Pathways
QuickGOQ86YF9
Ontology : AmiGOnucleic acid binding  protein binding  nucleus  nucleoplasm  cytoplasm  cytoplasm  centriole  microtubule organizing center  cytosol  smoothened signaling pathway  multicellular organism development  germ cell development  spermatogenesis  ciliary basal body  ciliary basal body  regulation of protein binding  establishment of protein localization  positive regulation of cilium assembly  metal ion binding  cytoplasmic sequestering of protein  cilium assembly  cilium assembly  protein localization to cilium  ciliary transition fiber  
Ontology : EGO-EBInucleic acid binding  protein binding  nucleus  nucleoplasm  cytoplasm  cytoplasm  centriole  microtubule organizing center  cytosol  smoothened signaling pathway  multicellular organism development  germ cell development  spermatogenesis  ciliary basal body  ciliary basal body  regulation of protein binding  establishment of protein localization  positive regulation of cilium assembly  metal ion binding  cytoplasmic sequestering of protein  cilium assembly  cilium assembly  protein localization to cilium  ciliary transition fiber  
NDEx NetworkDZIP1
Atlas of Cancer Signalling NetworkDZIP1
Wikipedia pathwaysDZIP1
Orthology - Evolution
OrthoDB22873
GeneTree (enSembl)ENSG00000134874
Phylogenetic Trees/Animal Genes : TreeFamDZIP1
HOGENOMQ86YF9
Homologs : HomoloGeneDZIP1
Homology/Alignments : Family Browser (UCSC)DZIP1
Gene fusions - Rearrangements
Fusion : QuiverDZIP1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDZIP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DZIP1
dbVarDZIP1
ClinVarDZIP1
1000_GenomesDZIP1 
Exome Variant ServerDZIP1
ExAC (Exome Aggregation Consortium)ENSG00000134874
GNOMAD BrowserENSG00000134874
Varsome BrowserDZIP1
Genetic variants : HAPMAP22873
Genomic Variants (DGV)DZIP1 [DGVbeta]
DECIPHERDZIP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDZIP1 
Mutations
ICGC Data PortalDZIP1 
TCGA Data PortalDZIP1 
Broad Tumor PortalDZIP1
OASIS PortalDZIP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDZIP1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DDZIP1
Mutations and Diseases : HGMDDZIP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DZIP1
DgiDB (Drug Gene Interaction Database)DZIP1
DoCM (Curated mutations)DZIP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DZIP1 (select a term)
intoGenDZIP1
Cancer3DDZIP1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608671   
Orphanet
DisGeNETDZIP1
MedgenDZIP1
Genetic Testing Registry DZIP1
NextProtQ86YF9 [Medical]
TSGene22873
GENETestsDZIP1
Target ValidationDZIP1
Huge Navigator DZIP1 [HugePedia]
snp3D : Map Gene to Disease22873
BioCentury BCIQDZIP1
ClinGenDZIP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD22873
Chemical/Pharm GKB GenePA134960194
Clinical trialDZIP1
Miscellaneous
canSAR (ICR)DZIP1 (select the gene name)
DataMed IndexDZIP1
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDZIP1
EVEXDZIP1
GoPubMedDZIP1
iHOPDZIP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Nov 13 17:41:19 CET 2019
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