Atlas of Genetics and Cytogenetics in Oncology and Haematology


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EEF1AKMT4 (EEF1A lysine methyltransferase 4)

Identity

Other alias-
HGNC (Hugo) EEF1AKMT4
LocusID (NCBI) 110599564
Atlas_Id 80100
Location 3q27.1  [Link to chromosome band 3q27]
Location_base_pair Starts at 184249657 and ends at 184258759 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)EEF1AKMT4   53611
Cards
Entrez_Gene (NCBI)EEF1AKMT4  110599564  EEF1A lysine methyltransferase 4
Aliases
GeneCards (Weizmann)EEF1AKMT4
Ensembl hg19 (Hinxton)ENSG00000284753 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000284753 [Gene_View]  ENSG00000284753 [Sequence]  chr3:184249657-184258759 [Contig_View]  EEF1AKMT4 [Vega]
ICGC DataPortalENSG00000284753
TCGA cBioPortalEEF1AKMT4
AceView (NCBI)EEF1AKMT4
Genatlas (Paris)EEF1AKMT4
WikiGenes110599564
SOURCE (Princeton)EEF1AKMT4
Genetics Home Reference (NIH)EEF1AKMT4
Genomic and cartography
GoldenPath hg38 (UCSC)EEF1AKMT4  -     chr3:184249657-184258759 +  3q27.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)EEF1AKMT4  -     3q27.1   [Description]    (hg19-Feb_2009)
GoldenPathEEF1AKMT4 - 3q27.1 [CytoView hg19]  EEF1AKMT4 - 3q27.1 [CytoView hg38]
ImmunoBaseENSG00000284753
Mapping of homologs : NCBIEEF1AKMT4 [Mapview hg19]  EEF1AKMT4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC005835 BC012449 BC069005 BU568980
RefSeq transcript (Entrez)NM_032331
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)EEF1AKMT4
Cluster EST : UnigeneHs.146161 [ NCBI ]
CGAP (NCI)Hs.146161
Alternative Splicing GalleryENSG00000284753
Gene ExpressionEEF1AKMT4 [ NCBI-GEO ]   EEF1AKMT4 [ EBI - ARRAY_EXPRESS ]   EEF1AKMT4 [ SEEK ]   EEF1AKMT4 [ MEM ]
Gene Expression Viewer (FireBrowse)EEF1AKMT4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)110599564
GTEX Portal (Tissue expression)EEF1AKMT4
Human Protein AtlasENSG00000284753-EEF1AKMT4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0DPD7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0DPD7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0DPD7
Splice isoforms : SwissVarP0DPD7
PhosPhoSitePlusP0DPD7
Domains : Interpro (EBI)Methyltransf_11    SAM-dependent_MTases   
Domain families : Pfam (Sanger)Methyltransf_11 (PF08241)   
Domain families : Pfam (NCBI)pfam08241   
Conserved Domain (NCBI)EEF1AKMT4
DMDM Disease mutations110599564
Blocks (Seattle)EEF1AKMT4
PDB (RSDB)2PXX   
PDB Europe2PXX   
PDB (PDBSum)2PXX   
PDB (IMB)2PXX   
Structural Biology KnowledgeBase2PXX   
SCOP (Structural Classification of Proteins)2PXX   
CATH (Classification of proteins structures)2PXX   
SuperfamilyP0DPD7
Human Protein Atlas [tissue]ENSG00000284753-EEF1AKMT4 [tissue]
Peptide AtlasP0DPD7
Protein Interaction databases
DIP (DOE-UCLA)P0DPD7
IntAct (EBI)P0DPD7
FunCoupENSG00000284753
BioGRIDEEF1AKMT4
STRING (EMBL)EEF1AKMT4
ZODIACEEF1AKMT4
Ontologies - Pathways
QuickGOP0DPD7
Ontology : AmiGOmethyltransferase activity  protein-lysine N-methyltransferase activity  peptidyl-lysine methylation  
Ontology : EGO-EBImethyltransferase activity  protein-lysine N-methyltransferase activity  peptidyl-lysine methylation  
NDEx NetworkEEF1AKMT4
Atlas of Cancer Signalling NetworkEEF1AKMT4
Wikipedia pathwaysEEF1AKMT4
Orthology - Evolution
OrthoDB110599564
GeneTree (enSembl)ENSG00000284753
Phylogenetic Trees/Animal Genes : TreeFamEEF1AKMT4
HOGENOMP0DPD7
Homologs : HomoloGeneEEF1AKMT4
Homology/Alignments : Family Browser (UCSC)EEF1AKMT4
Gene fusions - Rearrangements
Fusion : QuiverEEF1AKMT4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerEEF1AKMT4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)EEF1AKMT4
dbVarEEF1AKMT4
ClinVarEEF1AKMT4
1000_GenomesEEF1AKMT4 
Exome Variant ServerEEF1AKMT4
ExAC (Exome Aggregation Consortium)ENSG00000284753
GNOMAD BrowserENSG00000284753
Varsome BrowserEEF1AKMT4
Genetic variants : HAPMAP110599564
Genomic Variants (DGV)EEF1AKMT4 [DGVbeta]
DECIPHEREEF1AKMT4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisEEF1AKMT4 
Mutations
ICGC Data PortalEEF1AKMT4 
TCGA Data PortalEEF1AKMT4 
Broad Tumor PortalEEF1AKMT4
OASIS PortalEEF1AKMT4 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDEEF1AKMT4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch EEF1AKMT4
DgiDB (Drug Gene Interaction Database)EEF1AKMT4
DoCM (Curated mutations)EEF1AKMT4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)EEF1AKMT4 (select a term)
intoGenEEF1AKMT4
Cancer3DEEF1AKMT4(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETEEF1AKMT4
MedgenEEF1AKMT4
Genetic Testing Registry EEF1AKMT4
NextProtP0DPD7 [Medical]
TSGene110599564
GENETestsEEF1AKMT4
Target ValidationEEF1AKMT4
Huge Navigator EEF1AKMT4 [HugePedia]
snp3D : Map Gene to Disease110599564
BioCentury BCIQEEF1AKMT4
ClinGenEEF1AKMT4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD110599564
Clinical trialEEF1AKMT4
Miscellaneous
canSAR (ICR)EEF1AKMT4 (select the gene name)
DataMed IndexEEF1AKMT4
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineEEF1AKMT4
EVEXEEF1AKMT4
GoPubMedEEF1AKMT4
iHOPEEF1AKMT4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Sep 3 15:26:28 CEST 2019

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