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ENTR1 (endosome associated trafficking regulator 1)

Identity

Alias_namesSDCCAG3
serologically defined colon cancer antigen 3
Alias_symbol (synonym)NY-CO-3
Other alias
HGNC (Hugo) ENTR1
LocusID (NCBI) 10807
Atlas_Id 42230
Location 9q34.3  [Link to chromosome band 9q34]
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)ENTR1   10667
Cards
Entrez_Gene (NCBI)ENTR1  10807  endosome associated trafficking regulator 1
AliasesNY-CO-3; SDCCAG3
GeneCards (Weizmann)ENTR1
Ensembl hg19 (Hinxton)ENSG00000165689 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165689 [Gene_View]  ENSG00000165689 [Sequence]  - [Contig_View]  ENTR1 [Vega]
ICGC DataPortalENSG00000165689
TCGA cBioPortalENTR1
AceView (NCBI)ENTR1
Genatlas (Paris)ENTR1
WikiGenes10807
SOURCE (Princeton)ENTR1
Genetics Home Reference (NIH)ENTR1
Genomic and cartography
GoldenPath hg38 (UCSC)ENTR1  -  
GoldenPath hg19 (UCSC)ENTR1  -  
GoldenPathENTR1 - [CytoView hg19]  ENTR1 - [CytoView hg38]
ImmunoBaseENSG00000165689
Mapping of homologs : NCBIENTR1 [Mapview hg19]  ENTR1 [Mapview hg38]
OMIM618289   
Gene and transcription
Genbank (Entrez)AA742964 AF039688 AK001296 AL559847 AY129014
RefSeq transcript (Entrez)NM_001039707 NM_001039708 NM_006643
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ENTR1
Cluster EST : UnigeneHs.94300 [ NCBI ]
CGAP (NCI)Hs.94300
Alternative Splicing GalleryENSG00000165689
Gene ExpressionENTR1 [ NCBI-GEO ]   ENTR1 [ EBI - ARRAY_EXPRESS ]   ENTR1 [ SEEK ]   ENTR1 [ MEM ]
Gene Expression Viewer (FireBrowse)ENTR1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10807
GTEX Portal (Tissue expression)ENTR1
Human Protein AtlasENSG00000165689-ENTR1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96C92   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96C92  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96C92
Splice isoforms : SwissVarQ96C92
PhosPhoSitePlusQ96C92
Domains : Interpro (EBI)SDCCAG3   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ENTR1
DMDM Disease mutations10807
Blocks (Seattle)ENTR1
SuperfamilyQ96C92
Human Protein Atlas [tissue]ENSG00000165689-ENTR1 [tissue]
Peptide AtlasQ96C92
HPRD15307
IPIIPI00432355   IPI00093725   IPI00888891   IPI00514920   IPI00433461   IPI00514081   IPI00514356   IPI00646391   
Protein Interaction databases
DIP (DOE-UCLA)Q96C92
IntAct (EBI)Q96C92
FunCoupENSG00000165689
BioGRIDENTR1
STRING (EMBL)ENTR1
ZODIACENTR1
Ontologies - Pathways
QuickGOQ96C92
Ontology : AmiGOprotein binding  endosome  early endosome  early endosome  centrosome  centrosome  cell cycle  protein transport  cell projection organization  midbody  midbody  retromer complex  retromer complex  regulation of cytokinesis  regulation of cytokinesis  ciliary basal body  ciliary basal body  positive regulation of cilium assembly  positive regulation of cilium assembly  cell division  recycling endosome  recycling endosome  positive regulation of protein localization to cilium  positive regulation of protein localization to cilium  retrograde transport, endosome to plasma membrane  retrograde transport, endosome to plasma membrane  
Ontology : EGO-EBIprotein binding  endosome  early endosome  early endosome  centrosome  centrosome  cell cycle  protein transport  cell projection organization  midbody  midbody  retromer complex  retromer complex  regulation of cytokinesis  regulation of cytokinesis  ciliary basal body  ciliary basal body  positive regulation of cilium assembly  positive regulation of cilium assembly  cell division  recycling endosome  recycling endosome  positive regulation of protein localization to cilium  positive regulation of protein localization to cilium  retrograde transport, endosome to plasma membrane  retrograde transport, endosome to plasma membrane  
NDEx NetworkENTR1
Atlas of Cancer Signalling NetworkENTR1
Wikipedia pathwaysENTR1
Orthology - Evolution
OrthoDB10807
GeneTree (enSembl)ENSG00000165689
Phylogenetic Trees/Animal Genes : TreeFamENTR1
HOGENOMQ96C92
Homologs : HomoloGeneENTR1
Homology/Alignments : Family Browser (UCSC)ENTR1
Gene fusions - Rearrangements
Fusion : QuiverENTR1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerENTR1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ENTR1
dbVarENTR1
ClinVarENTR1
1000_GenomesENTR1 
Exome Variant ServerENTR1
ExAC (Exome Aggregation Consortium)ENSG00000165689
GNOMAD BrowserENSG00000165689
Varsome BrowserENTR1
Genetic variants : HAPMAP10807
Genomic Variants (DGV)ENTR1 [DGVbeta]
DECIPHERENTR1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisENTR1 
Mutations
ICGC Data PortalENTR1 
TCGA Data PortalENTR1 
Broad Tumor PortalENTR1
OASIS PortalENTR1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICENTR1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DENTR1
Mutations and Diseases : HGMDENTR1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ENTR1
DgiDB (Drug Gene Interaction Database)ENTR1
DoCM (Curated mutations)ENTR1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ENTR1 (select a term)
intoGenENTR1
Cancer3DENTR1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM618289   
Orphanet
DisGeNETENTR1
MedgenENTR1
Genetic Testing Registry ENTR1
NextProtQ96C92 [Medical]
TSGene10807
GENETestsENTR1
Target ValidationENTR1
Huge Navigator ENTR1 [HugePedia]
snp3D : Map Gene to Disease10807
BioCentury BCIQENTR1
ClinGenENTR1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10807
Chemical/Pharm GKB GenePA35597
Clinical trialENTR1
Miscellaneous
canSAR (ICR)ENTR1 (select the gene name)
DataMed IndexENTR1
Probes
Litterature
PubMed42 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineENTR1
EVEXENTR1
GoPubMedENTR1
iHOPENTR1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Nov 13 17:42:04 CET 2019

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