Atlas of Genetics and Cytogenetics in Oncology and Haematology

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EPHA1-AS1 (EPHA1 antisense RNA 1)

Identity

Alias_namesEPHA1 antisense RNA 1 (non-protein coding)
Other alias-
HGNC (Hugo) EPHA1-AS1
LocusID (NCBI) 285965
Atlas_Id 62860
Location 7q35  [Link to chromosome band 7q35]
Location_base_pair Starts at 143407813 and ends at 143523447 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)EPHA1-AS1   27799
Cards
Entrez_Gene (NCBI)EPHA1-AS1  285965  EPHA1 antisense RNA 1
Aliases
GeneCards (Weizmann)EPHA1-AS1
Ensembl hg19 (Hinxton)ENSG00000229153 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000229153 [Gene_View]  ENSG00000229153 [Sequence]  chr7:143407813-143523447 [Contig_View]  EPHA1-AS1 [Vega]
ICGC DataPortalENSG00000229153
TCGA cBioPortalEPHA1-AS1
AceView (NCBI)EPHA1-AS1
Genatlas (Paris)EPHA1-AS1
WikiGenes285965
SOURCE (Princeton)EPHA1-AS1
Genetics Home Reference (NIH)EPHA1-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)EPHA1-AS1  -     chr7:143407813-143523447 +  7q35   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)EPHA1-AS1  -     7q35   [Description]    (hg19-Feb_2009)
GoldenPathEPHA1-AS1 - 7q35 [CytoView hg19]  EPHA1-AS1 - 7q35 [CytoView hg38]
ImmunoBaseENSG00000229153
Mapping of homologs : NCBIEPHA1-AS1 [Mapview hg19]  EPHA1-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AL833583
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)EPHA1-AS1
Cluster EST : UnigeneHs.642649 [ NCBI ]
CGAP (NCI)Hs.642649
Alternative Splicing GalleryENSG00000229153
Gene ExpressionEPHA1-AS1 [ NCBI-GEO ]   EPHA1-AS1 [ EBI - ARRAY_EXPRESS ]   EPHA1-AS1 [ SEEK ]   EPHA1-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)EPHA1-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)285965
GTEX Portal (Tissue expression)EPHA1-AS1
Human Protein AtlasENSG00000229153-EPHA1-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)EPHA1-AS1
DMDM Disease mutations285965
Blocks (Seattle)EPHA1-AS1
Human Protein Atlas [tissue]ENSG00000229153-EPHA1-AS1 [tissue]
Protein Interaction databases
FunCoupENSG00000229153
BioGRIDEPHA1-AS1
STRING (EMBL)EPHA1-AS1
ZODIACEPHA1-AS1
Ontologies - Pathways
Huge Navigator EPHA1-AS1 [HugePedia]
snp3D : Map Gene to Disease285965
BioCentury BCIQEPHA1-AS1
ClinGenEPHA1-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD285965
Clinical trialEPHA1-AS1
Miscellaneous
canSAR (ICR)EPHA1-AS1 (select the gene name)
DataMed IndexEPHA1-AS1
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineEPHA1-AS1
EVEXEPHA1-AS1
GoPubMedEPHA1-AS1
iHOPEPHA1-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 15:26:50 CEST 2019
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