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ERV3-1-ZNF117 (ERV3-1-ZNF117 readthrough)

Identity

Other aliash-PLK
HGNC (Hugo) -
LocusID (NCBI) 109504726
Atlas_Id 79447
Location 7q11.21  [Link to chromosome band 7q11]
Location_base_pair Starts at 64974452 and ends at 65006746 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)ERV3-1-ZNF117  109504726  ERV3-1-ZNF117 readthrough
Aliasesh-PLK
GeneCards (Weizmann)ERV3-1-ZNF117
Ensembl hg19 (Hinxton)ENSG00000152926 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000152926 [Gene_View]  ENSG00000152926 [Sequence]  chr7:64974452-65006746 [Contig_View]  ERV3-1-ZNF117 [Vega]
ICGC DataPortalENSG00000152926
TCGA cBioPortalERV3-1-ZNF117
AceView (NCBI)ERV3-1-ZNF117
Genatlas (Paris)ERV3-1-ZNF117
WikiGenes109504726
SOURCE (Princeton)ERV3-1-ZNF117
Genetics Home Reference (NIH)ERV3-1-ZNF117
Genomic and cartography
GoldenPath hg38 (UCSC)ERV3-1-ZNF117  -     chr7:64974452-65006746 -  7q11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ERV3-1-ZNF117  -     7q11.21   [Description]    (hg19-Feb_2009)
GoldenPathERV3-1-ZNF117 - 7q11.21 [CytoView hg19]  ERV3-1-ZNF117 - 7q11.21 [CytoView hg38]
ImmunoBaseENSG00000152926
Mapping of homologs : NCBIERV3-1-ZNF117 [Mapview hg19]  ERV3-1-ZNF117 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BM718230 DA256611
RefSeq transcript (Entrez)NM_001348050
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ERV3-1-ZNF117
Cluster EST : UnigeneHs.250693 [ NCBI ]
CGAP (NCI)Hs.250693
Alternative Splicing GalleryENSG00000152926
Gene ExpressionERV3-1-ZNF117 [ NCBI-GEO ]   ERV3-1-ZNF117 [ EBI - ARRAY_EXPRESS ]   ERV3-1-ZNF117 [ SEEK ]   ERV3-1-ZNF117 [ MEM ]
Gene Expression Viewer (FireBrowse)ERV3-1-ZNF117 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)109504726
GTEX Portal (Tissue expression)ERV3-1-ZNF117
Human Protein AtlasENSG00000152926-ERV3-1-ZNF117 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ03924   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ03924  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ03924
Splice isoforms : SwissVarQ03924
PhosPhoSitePlusQ03924
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)YY-1-like    Znf_C2H2_sf    Znf_C2H2_type   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ERV3-1-ZNF117
DMDM Disease mutations109504726
Blocks (Seattle)ERV3-1-ZNF117
SuperfamilyQ03924
Human Protein Atlas [tissue]ENSG00000152926-ERV3-1-ZNF117 [tissue]
Peptide AtlasQ03924
Protein Interaction databases
DIP (DOE-UCLA)Q03924
IntAct (EBI)Q03924
FunCoupENSG00000152926
BioGRIDERV3-1-ZNF117
STRING (EMBL)ERV3-1-ZNF117
ZODIACERV3-1-ZNF117
Ontologies - Pathways
QuickGOQ03924
Ontology : AmiGODNA-binding transcription factor activity, RNA polymerase II-specific  DNA binding  DNA-binding transcription factor activity  nucleus  regulation of transcription by RNA polymerase II  zinc ion binding  
Ontology : EGO-EBIDNA-binding transcription factor activity, RNA polymerase II-specific  DNA binding  DNA-binding transcription factor activity  nucleus  regulation of transcription by RNA polymerase II  zinc ion binding  
NDEx NetworkERV3-1-ZNF117
Atlas of Cancer Signalling NetworkERV3-1-ZNF117
Wikipedia pathwaysERV3-1-ZNF117
Orthology - Evolution
OrthoDB109504726
GeneTree (enSembl)ENSG00000152926
Phylogenetic Trees/Animal Genes : TreeFam-
HOGENOMQ03924
Homologs : HomoloGeneERV3-1-ZNF117
Homology/Alignments : Family Browser (UCSC)ERV3-1-ZNF117
Gene fusions - Rearrangements
Fusion : QuiverERV3-1-ZNF117
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerERV3-1-ZNF117 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ERV3-1-ZNF117
dbVarERV3-1-ZNF117
ClinVarERV3-1-ZNF117
1000_GenomesERV3-1-ZNF117 
Exome Variant ServerERV3-1-ZNF117
ExAC (Exome Aggregation Consortium)ENSG00000152926
GNOMAD BrowserENSG00000152926
Varsome BrowserERV3-1-ZNF117
Genetic variants : HAPMAP109504726
Genomic Variants (DGV)ERV3-1-ZNF117 [DGVbeta]
DECIPHERERV3-1-ZNF117 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisERV3-1-ZNF117 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Mutations and Diseases : HGMD-
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ERV3-1-ZNF117
DgiDB (Drug Gene Interaction Database)ERV3-1-ZNF117
DoCM (Curated mutations)ERV3-1-ZNF117 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ERV3-1-ZNF117 (select a term)
intoGenERV3-1-ZNF117
Cancer3DERV3-1-ZNF117(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETERV3-1-ZNF117
MedgenERV3-1-ZNF117
Genetic Testing Registry ERV3-1-ZNF117
NextProtQ03924 [Medical]
TSGene109504726
GENETestsERV3-1-ZNF117
Target ValidationERV3-1-ZNF117
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease109504726
BioCentury BCIQERV3-1-ZNF117
ClinGenERV3-1-ZNF117
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD109504726
Clinical trialERV3-1-ZNF117
Miscellaneous
canSAR (ICR)ERV3-1-ZNF117 (select the gene name)
DataMed IndexERV3-1-ZNF117
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineERV3-1-ZNF117
EVEXERV3-1-ZNF117
GoPubMedERV3-1-ZNF117
iHOPERV3-1-ZNF117
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Sep 3 15:26:57 CEST 2019

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