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ERVFC1-1 (endogenous retrovirus group FC1 member 1, envelope)

Identity

Alias_namesendogenous retrovirus group FC1, member 1
endogenous retrovirus group FC1 member 1
Alias_symbol (synonym)FLJ42291
envF(c)2
TCONS_l2_00027524
Other alias
HGNC (Hugo) ERVFC1-1
LocusID (NCBI) 346547
Atlas_Id 57018
Location 7q36.2  [Link to chromosome band 7q36]
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)ERVFC1-1   38137
Cards
Entrez_Gene (NCBI)ERVFC1-1  346547  endogenous retrovirus group FC1 member 1, envelope
AliasesenvF(c)2
GeneCards (Weizmann)ERVFC1-1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  - [Contig_View]  ERVFC1-1 [Vega]
TCGA cBioPortalERVFC1-1
AceView (NCBI)ERVFC1-1
Genatlas (Paris)ERVFC1-1
WikiGenes346547
SOURCE (Princeton)ERVFC1-1
Genetics Home Reference (NIH)ERVFC1-1
Genomic and cartography
GoldenPath hg38 (UCSC)ERVFC1-1  -  
GoldenPath hg19 (UCSC)ERVFC1-1  -  
GoldenPathERVFC1-1 - [CytoView hg19]  ERVFC1-1 - [CytoView hg38]
Mapping of homologs : NCBIERVFC1-1 [Mapview hg19]  ERVFC1-1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK124285
RefSeq transcript (Entrez)NM_207367
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ERVFC1-1
Gene ExpressionERVFC1-1 [ NCBI-GEO ]   ERVFC1-1 [ EBI - ARRAY_EXPRESS ]   ERVFC1-1 [ SEEK ]   ERVFC1-1 [ MEM ]
Gene Expression Viewer (FireBrowse)ERVFC1-1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)346547
GTEX Portal (Tissue expression)ERVFC1-1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP60608   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP60608  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP60608
Splice isoforms : SwissVarP60608
PhosPhoSitePlusP60608
Domains : Interpro (EBI)TLV/ENV_coat_polyprotein   
Domain families : Pfam (Sanger)TLV_coat (PF00429)   
Domain families : Pfam (NCBI)pfam00429   
Conserved Domain (NCBI)ERVFC1-1
DMDM Disease mutations346547
Blocks (Seattle)ERVFC1-1
SuperfamilyP60608
Peptide AtlasP60608
IPIIPI00410440   
Protein Interaction databases
DIP (DOE-UCLA)P60608
IntAct (EBI)P60608
BioGRIDERVFC1-1
STRING (EMBL)ERVFC1-1
ZODIACERVFC1-1
Ontologies - Pathways
QuickGOP60608
Ontology : AmiGOsyncytium formation by plasma membrane fusion  molecular_function  cellular_component  
Ontology : EGO-EBIsyncytium formation by plasma membrane fusion  molecular_function  cellular_component  
NDEx NetworkERVFC1-1
Atlas of Cancer Signalling NetworkERVFC1-1
Wikipedia pathwaysERVFC1-1
Orthology - Evolution
OrthoDB346547
Phylogenetic Trees/Animal Genes : TreeFamERVFC1-1
HOGENOMP60608
Homologs : HomoloGeneERVFC1-1
Homology/Alignments : Family Browser (UCSC)ERVFC1-1
Gene fusions - Rearrangements
Fusion : QuiverERVFC1-1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerERVFC1-1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ERVFC1-1
dbVarERVFC1-1
ClinVarERVFC1-1
1000_GenomesERVFC1-1 
Exome Variant ServerERVFC1-1
Varsome BrowserERVFC1-1
Genetic variants : HAPMAP346547
Genomic Variants (DGV)ERVFC1-1 [DGVbeta]
DECIPHERERVFC1-1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisERVFC1-1 
Mutations
ICGC Data PortalERVFC1-1 
TCGA Data PortalERVFC1-1 
Broad Tumor PortalERVFC1-1
OASIS PortalERVFC1-1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDERVFC1-1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ERVFC1-1
DgiDB (Drug Gene Interaction Database)ERVFC1-1
DoCM (Curated mutations)ERVFC1-1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ERVFC1-1 (select a term)
intoGenERVFC1-1
Cancer3DERVFC1-1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETERVFC1-1
MedgenERVFC1-1
Genetic Testing Registry ERVFC1-1
NextProtP60608 [Medical]
TSGene346547
GENETestsERVFC1-1
Target ValidationERVFC1-1
Huge Navigator ERVFC1-1 [HugePedia]
snp3D : Map Gene to Disease346547
BioCentury BCIQERVFC1-1
ClinGenERVFC1-1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD346547
Clinical trialERVFC1-1
Miscellaneous
canSAR (ICR)ERVFC1-1 (select the gene name)
DataMed IndexERVFC1-1
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineERVFC1-1
EVEXERVFC1-1
GoPubMedERVFC1-1
iHOPERVFC1-1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Wed Nov 13 17:42:20 CET 2019

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