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ERVFC1 (endogenous retrovirus group FC1 Env polyprotein)

Identity

Alias_symbol (synonym)EnvF(c)1
Other aliasFc1env
HERV-Fc1env
HGNC (Hugo) -
LocusID (NCBI) 105373297
Atlas_Id 58036
Location Xq21.33  [Link to chromosome band Xq21]
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)ERVFC1  105373297  endogenous retrovirus group FC1 Env polyprotein
AliasesFc1env; HERV-Fc1env
GeneCards (Weizmann)ERVFC1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  - [Contig_View]  ERVFC1 [Vega]
TCGA cBioPortalERVFC1
AceView (NCBI)ERVFC1
Genatlas (Paris)ERVFC1
WikiGenes105373297
SOURCE (Princeton)ERVFC1
Genetics Home Reference (NIH)ERVFC1
Genomic and cartography
GoldenPath hg38 (UCSC)ERVFC1  -  
GoldenPath hg19 (UCSC)ERVFC1  -  
GoldenPathERVFC1 - [CytoView hg19]  ERVFC1 - [CytoView hg38]
Mapping of homologs : NCBIERVFC1 [Mapview hg19]  ERVFC1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ERVFC1
Gene ExpressionERVFC1 [ NCBI-GEO ]   ERVFC1 [ EBI - ARRAY_EXPRESS ]   ERVFC1 [ SEEK ]   ERVFC1 [ MEM ]
Gene Expression Viewer (FireBrowse)ERVFC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)105373297
GTEX Portal (Tissue expression)ERVFC1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP60507   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP60507  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP60507
Splice isoforms : SwissVarP60507
PhosPhoSitePlusP60507
Domains : Interpro (EBI)TLV/ENV_coat_polyprotein   
Domain families : Pfam (Sanger)TLV_coat (PF00429)   
Domain families : Pfam (NCBI)pfam00429   
Conserved Domain (NCBI)ERVFC1
DMDM Disease mutations105373297
Blocks (Seattle)ERVFC1
SuperfamilyP60507
Peptide AtlasP60507
Protein Interaction databases
DIP (DOE-UCLA)P60507
IntAct (EBI)P60507
BioGRIDERVFC1
STRING (EMBL)ERVFC1
ZODIACERVFC1
Ontologies - Pathways
QuickGOP60507
Ontology : AmiGOsyncytium formation by plasma membrane fusion  molecular_function  cellular_component  plasma membrane  integral component of membrane  
Ontology : EGO-EBIsyncytium formation by plasma membrane fusion  molecular_function  cellular_component  plasma membrane  integral component of membrane  
NDEx NetworkERVFC1
Atlas of Cancer Signalling NetworkERVFC1
Wikipedia pathwaysERVFC1
Orthology - Evolution
OrthoDB105373297
Phylogenetic Trees/Animal Genes : TreeFam-
HOGENOMP60507
Homologs : HomoloGeneERVFC1
Homology/Alignments : Family Browser (UCSC)ERVFC1
Gene fusions - Rearrangements
Fusion : QuiverERVFC1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerERVFC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ERVFC1
dbVarERVFC1
ClinVarERVFC1
1000_GenomesERVFC1 
Exome Variant ServerERVFC1
Varsome BrowserERVFC1
Genetic variants : HAPMAP105373297
Genomic Variants (DGV)ERVFC1 [DGVbeta]
DECIPHERERVFC1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisERVFC1 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Mutations and Diseases : HGMD-
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ERVFC1
DgiDB (Drug Gene Interaction Database)ERVFC1
DoCM (Curated mutations)ERVFC1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ERVFC1 (select a term)
intoGenERVFC1
Cancer3DERVFC1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETERVFC1
MedgenERVFC1
Genetic Testing Registry ERVFC1
NextProtP60507 [Medical]
TSGene105373297
GENETestsERVFC1
Target ValidationERVFC1
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease105373297
BioCentury BCIQERVFC1
ClinGenERVFC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105373297
Clinical trialERVFC1
Miscellaneous
canSAR (ICR)ERVFC1 (select the gene name)
DataMed IndexERVFC1
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineERVFC1
EVEXERVFC1
GoPubMedERVFC1
iHOPERVFC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Nov 13 17:42:19 CET 2019

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