Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ERVK-10 (endogenous retrovirus group K member 10)

Identity

Alias_namesendogenous retrovirus group K, member 10
Other aliasPR
Protease
Proteinase
HGNC (Hugo) ERVK-10
LocusID (NCBI) 100616101
Atlas_Id 57469
Location 5q33.3  [Link to chromosome band 5q33]
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)ERVK-10   39004
Cards
Entrez_Gene (NCBI)ERVK-10  100616101  endogenous retrovirus group K member 10
AliasesPR; Protease; Proteinase
GeneCards (Weizmann)ERVK-10
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  - [Contig_View]  ERVK-10 [Vega]
TCGA cBioPortalERVK-10
AceView (NCBI)ERVK-10
Genatlas (Paris)ERVK-10
WikiGenes100616101
SOURCE (Princeton)ERVK-10
Genetics Home Reference (NIH)ERVK-10
Genomic and cartography
GoldenPath hg38 (UCSC)ERVK-10  -  
GoldenPath hg19 (UCSC)ERVK-10  -  
GoldenPathERVK-10 - [CytoView hg19]  ERVK-10 - [CytoView hg38]
Mapping of homologs : NCBIERVK-10 [Mapview hg19]  ERVK-10 [Mapview hg38]
Gene and transcription
Genbank (Entrez)CF227253 CN345079 FN806835
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ERVK-10
Gene ExpressionERVK-10 [ NCBI-GEO ]   ERVK-10 [ EBI - ARRAY_EXPRESS ]   ERVK-10 [ SEEK ]   ERVK-10 [ MEM ]
Gene Expression Viewer (FireBrowse)ERVK-10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100616101
GTEX Portal (Tissue expression)ERVK-10
Protein : pattern, domain, 3D structure
UniProt/SwissProtP87889   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP87889  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP87889
Splice isoforms : SwissVarP87889
PhosPhoSitePlusP87889
Domaine pattern : Prosite (Expaxy)ZF_CCHC (PS50158)   
Domains : Interpro (EBI)B_retro_matrix    B_retro_matrix_sf    Gag_p24    Retrov_capsid_C    Retrov_capsid_N    Retrovr_matrix    Znf_CCHC    Znf_CCHC_sf   
Domain families : Pfam (Sanger)Gag_p10 (PF02337)    Gag_p24 (PF00607)    zf-CCHC (PF00098)   
Domain families : Pfam (NCBI)pfam02337    pfam00607    pfam00098   
Domain families : Smart (EMBL)ZnF_C2HC (SM00343)  
Domain structure : Prodom (Prabi Lyon)B_retro_matrix_N (PD004265)   
Conserved Domain (NCBI)ERVK-10
DMDM Disease mutations100616101
Blocks (Seattle)ERVK-10
SuperfamilyP87889
Peptide AtlasP87889
IPIIPI01018219   IPI00382531   IPI00432156   
Protein Interaction databases
DIP (DOE-UCLA)P87889
IntAct (EBI)P87889
BioGRIDERVK-10
STRING (EMBL)ERVK-10
ZODIACERVK-10
Ontologies - Pathways
QuickGOP87889
Ontology : AmiGODNA binding  RNA-directed DNA polymerase activity  RNA-DNA hybrid ribonuclease activity  cellular_component  RNA-dependent DNA biosynthetic process  DNA recombination  biological_process  zinc ion binding  DNA integration  RNA stem-loop binding  RNA phosphodiester bond hydrolysis, endonucleolytic  
Ontology : EGO-EBIDNA binding  RNA-directed DNA polymerase activity  RNA-DNA hybrid ribonuclease activity  cellular_component  RNA-dependent DNA biosynthetic process  DNA recombination  biological_process  zinc ion binding  DNA integration  RNA stem-loop binding  RNA phosphodiester bond hydrolysis, endonucleolytic  
NDEx NetworkERVK-10
Atlas of Cancer Signalling NetworkERVK-10
Wikipedia pathwaysERVK-10
Orthology - Evolution
OrthoDB100616101
Phylogenetic Trees/Animal Genes : TreeFamERVK-10
HOGENOMP87889
Homologs : HomoloGeneERVK-10
Homology/Alignments : Family Browser (UCSC)ERVK-10
Gene fusions - Rearrangements
Fusion : QuiverERVK-10
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerERVK-10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ERVK-10
dbVarERVK-10
ClinVarERVK-10
1000_GenomesERVK-10 
Exome Variant ServerERVK-10
Varsome BrowserERVK-10
Genetic variants : HAPMAP100616101
Genomic Variants (DGV)ERVK-10 [DGVbeta]
DECIPHERERVK-10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisERVK-10 
Mutations
ICGC Data PortalERVK-10 
TCGA Data PortalERVK-10 
Broad Tumor PortalERVK-10
OASIS PortalERVK-10 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDERVK-10
BioMutasearch ERVK-10
DgiDB (Drug Gene Interaction Database)ERVK-10
DoCM (Curated mutations)ERVK-10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ERVK-10 (select a term)
intoGenERVK-10
Cancer3DERVK-10(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETERVK-10
MedgenERVK-10
Genetic Testing Registry ERVK-10
NextProtP87889 [Medical]
TSGene100616101
GENETestsERVK-10
Target ValidationERVK-10
Huge Navigator ERVK-10 [HugePedia]
snp3D : Map Gene to Disease100616101
BioCentury BCIQERVK-10
ClinGenERVK-10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100616101
Clinical trialERVK-10
Miscellaneous
canSAR (ICR)ERVK-10 (select the gene name)
DataMed IndexERVK-10
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineERVK-10
EVEXERVK-10
GoPubMedERVK-10
iHOPERVK-10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Nov 13 17:42:20 CET 2019

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.