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ERVK-19 (endogenous retrovirus group K member 19, envelope)

Identity

Alias_namesendogenous retrovirus group K, member 19
Alias_symbol (synonym)P1.8
HERV-K(C19)
envK3
Other aliasPR
Protease
Proteinase
polymerase
HGNC (Hugo) ERVK-19
LocusID (NCBI) 100862685
Atlas_Id 62911
Location 6q14.1  [Link to chromosome band 6q14]
Location_base_pair Starts at 77717790 and ends at 77719955 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)ERVK-19   39026
Cards
Entrez_Gene (NCBI)ERVK-19  100862685  endogenous retrovirus group K member 19, envelope
AliasesHERV-K(C19); P1.8; PR; Protease; 
Proteinase; envK3; polymerase
GeneCards (Weizmann)ERVK-19
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr6:77717790-77719955 [Contig_View]  ERVK-19 [Vega]
TCGA cBioPortalERVK-19
AceView (NCBI)ERVK-19
Genatlas (Paris)ERVK-19
WikiGenes100862685
SOURCE (Princeton)ERVK-19
Genetics Home Reference (NIH)ERVK-19
Genomic and cartography
GoldenPath hg38 (UCSC)ERVK-19  -     chr6:77717790-77719955 -  6q14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ERVK-19  -     6q14.1   [Description]    (hg19-Feb_2009)
GoldenPathERVK-19 - 6q14.1 [CytoView hg19]  ERVK-19 - 6q14.1 [CytoView hg38]
Mapping of homologs : NCBIERVK-19 [Mapview hg19]  ERVK-19 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AY395519 U87593
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ERVK-19
Gene ExpressionERVK-19 [ NCBI-GEO ]   ERVK-19 [ EBI - ARRAY_EXPRESS ]   ERVK-19 [ SEEK ]   ERVK-19 [ MEM ]
Gene Expression Viewer (FireBrowse)ERVK-19 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100862685
GTEX Portal (Tissue expression)ERVK-19
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9WJR5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9WJR5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9WJR5
Splice isoforms : SwissVarQ9WJR5
PhosPhoSitePlusQ9WJR5
Domaine pattern : Prosite (Expaxy)INTEGRASE (PS50994)    INTEGRASE_DBD (PS51027)    RNASE_H (PS50879)    RT_POL (PS50878)    ZF_INTEGRASE (PS50876)   
Domains : Interpro (EBI)Integrase-like_N    Integrase_C_dom_sf_retrovir    Integrase_C_retrovir    Integrase_cat-core    Integrase_Zn-bd_dom_N    RNaseH-like_sf    RNaseH_domain    RNaseH_sf    RT_dom    RVT_thumb   
Domain families : Pfam (Sanger)IN_DBD_C (PF00552)    Integrase_Zn (PF02022)    RNase_H (PF00075)    rve (PF00665)    RVT_1 (PF00078)    RVT_thumb (PF06817)   
Domain families : Pfam (NCBI)pfam00552    pfam02022    pfam00075    pfam00665    pfam00078    pfam06817   
Conserved Domain (NCBI)ERVK-19
DMDM Disease mutations100862685
Blocks (Seattle)ERVK-19
SuperfamilyQ9WJR5
Peptide AtlasQ9WJR5
Protein Interaction databases
DIP (DOE-UCLA)Q9WJR5
IntAct (EBI)Q9WJR5
BioGRIDERVK-19
STRING (EMBL)ERVK-19
ZODIACERVK-19
Ontologies - Pathways
QuickGOQ9WJR5
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkERVK-19
Atlas of Cancer Signalling NetworkERVK-19
Wikipedia pathwaysERVK-19
Orthology - Evolution
OrthoDB100862685
Phylogenetic Trees/Animal Genes : TreeFamERVK-19
HOGENOMQ9WJR5
Homologs : HomoloGeneERVK-19
Homology/Alignments : Family Browser (UCSC)ERVK-19
Gene fusions - Rearrangements
Fusion : QuiverERVK-19
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerERVK-19 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ERVK-19
dbVarERVK-19
ClinVarERVK-19
1000_GenomesERVK-19 
Exome Variant ServerERVK-19
Varsome BrowserERVK-19
Genetic variants : HAPMAP100862685
Genomic Variants (DGV)ERVK-19 [DGVbeta]
DECIPHERERVK-19 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisERVK-19 
Mutations
ICGC Data PortalERVK-19 
TCGA Data PortalERVK-19 
Broad Tumor PortalERVK-19
OASIS PortalERVK-19 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDERVK-19
BioMutasearch ERVK-19
DgiDB (Drug Gene Interaction Database)ERVK-19
DoCM (Curated mutations)ERVK-19 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ERVK-19 (select a term)
intoGenERVK-19
Cancer3DERVK-19(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETERVK-19
MedgenERVK-19
Genetic Testing Registry ERVK-19
NextProtQ9WJR5 [Medical]
TSGene100862685
GENETestsERVK-19
Target ValidationERVK-19
Huge Navigator ERVK-19 [HugePedia]
snp3D : Map Gene to Disease100862685
BioCentury BCIQERVK-19
ClinGenERVK-19
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100862685
Clinical trialERVK-19
Miscellaneous
canSAR (ICR)ERVK-19 (select the gene name)
DataMed IndexERVK-19
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineERVK-19
EVEXERVK-19
GoPubMedERVK-19
iHOPERVK-19
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 15:27:01 CEST 2019
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