Atlas of Genetics and Cytogenetics in Oncology and Haematology

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ETDB (embryonic testis differentiation homolog B)

Identity

Alias_namesLINC00633
long intergenic non-protein coding RNA 633
Other aliasETDA
HGNC (Hugo) ETDB
LocusID (NCBI) 100129515
Atlas_Id 79867
Location Xq26.3  [Link to chromosome band Xq26]
Location_base_pair Starts at 135118956 and ends at 135120526 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)ETDB   44269
Cards
Entrez_Gene (NCBI)ETDB  100129515  embryonic testis differentiation homolog B
AliasesETDA; LINC00633
GeneCards (Weizmann)ETDB
Ensembl hg19 (Hinxton)ENSG00000224107 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000224107 [Gene_View]  ENSG00000224107 [Sequence]  chrX:135118956-135120526 [Contig_View]  ETDB [Vega]
ICGC DataPortalENSG00000224107
TCGA cBioPortalETDB
AceView (NCBI)ETDB
Genatlas (Paris)ETDB
WikiGenes100129515
SOURCE (Princeton)ETDB
Genetics Home Reference (NIH)ETDB
Genomic and cartography
GoldenPath hg38 (UCSC)ETDB  -     chrX:135118956-135120526 -  Xq26.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ETDB  -     Xq26.3   [Description]    (hg19-Feb_2009)
GoldenPathETDB - Xq26.3 [CytoView hg19]  ETDB - Xq26.3 [CytoView hg38]
ImmunoBaseENSG00000224107
genome Data Viewer NCBIETDB [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AI015085 AY730280 BX106414
RefSeq transcript (Entrez)NM_001355519
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ETDB
Alternative Splicing GalleryENSG00000224107
Gene ExpressionETDB [ NCBI-GEO ]   ETDB [ EBI - ARRAY_EXPRESS ]   ETDB [ SEEK ]   ETDB [ MEM ]
Gene Expression Viewer (FireBrowse)ETDB [ Firebrowse - Broad ]
GenevisibleExpression of ETDB in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100129515
GTEX Portal (Tissue expression)ETDB
Human Protein AtlasENSG00000224107-ETDB [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0DPP9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0DPP9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0DPP9
Splice isoforms : SwissVarP0DPP9
PhosPhoSitePlusP0DPP9
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ETDB
DMDM Disease mutations100129515
Blocks (Seattle)ETDB
SuperfamilyP0DPP9
Human Protein Atlas [tissue]ENSG00000224107-ETDB [tissue]
Peptide AtlasP0DPP9
IPIIPI00651669   
Protein Interaction databases
DIP (DOE-UCLA)P0DPP9
IntAct (EBI)P0DPP9
FunCoupENSG00000224107
BioGRIDETDB
STRING (EMBL)ETDB
ZODIACETDB
Ontologies - Pathways
QuickGOP0DPP9
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkETDB
Atlas of Cancer Signalling NetworkETDB
Wikipedia pathwaysETDB
Orthology - Evolution
OrthoDB100129515
GeneTree (enSembl)ENSG00000224107
Phylogenetic Trees/Animal Genes : TreeFamETDB
HOGENOMP0DPP9
Homologs : HomoloGeneETDB
Homology/Alignments : Family Browser (UCSC)ETDB
Gene fusions - Rearrangements
Fusion : QuiverETDB
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerETDB [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ETDB
dbVarETDB
ClinVarETDB
1000_GenomesETDB 
Exome Variant ServerETDB
GNOMAD BrowserENSG00000224107
Varsome BrowserETDB
Genetic variants : HAPMAP100129515
Genomic Variants (DGV)ETDB [DGVbeta]
DECIPHERETDB [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisETDB 
Mutations
ICGC Data PortalETDB 
TCGA Data PortalETDB 
Broad Tumor PortalETDB
OASIS PortalETDB [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICETDB  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DETDB
Mutations and Diseases : HGMDETDB
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ETDB
DgiDB (Drug Gene Interaction Database)ETDB
DoCM (Curated mutations)ETDB (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ETDB (select a term)
intoGenETDB
Cancer3DETDB(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETETDB
MedgenETDB
Genetic Testing Registry ETDB
NextProtP0DPP9 [Medical]
TSGene100129515
GENETestsETDB
Target ValidationETDB
Huge Navigator ETDB [HugePedia]
snp3D : Map Gene to Disease100129515
BioCentury BCIQETDB
ClinGenETDB
Clinical trials, drugs, therapy
Protein Interactions : CTD100129515
Clinical trialETDB
Miscellaneous
canSAR (ICR)ETDB (select the gene name)
HarmonizomeETDB
DataMed IndexETDB
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineETDB
EVEXETDB
GoPubMedETDB
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Jul 10 20:01:48 CEST 2020
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