Atlas of Genetics and Cytogenetics in Oncology and Haematology

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ETDB (embryonic testis differentiation homolog B)

Identity

Alias_namesLINC00633
long intergenic non-protein coding RNA 633
Other aliasETDA
HGNC (Hugo) ETDB
LocusID (NCBI) 100129515
Atlas_Id 79867
Location Xq26.3  [Link to chromosome band Xq26]
Location_base_pair Starts at 135118956 and ends at 135120477 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)ETDB   44269
Cards
Entrez_Gene (NCBI)ETDB  100129515  embryonic testis differentiation homolog B
AliasesETDA; LINC00633
GeneCards (Weizmann)ETDB
Ensembl hg19 (Hinxton)ENSG00000224107 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000224107 [Gene_View]  ENSG00000224107 [Sequence]  chrX:135118956-135120477 [Contig_View]  ETDB [Vega]
ICGC DataPortalENSG00000224107
TCGA cBioPortalETDB
AceView (NCBI)ETDB
Genatlas (Paris)ETDB
WikiGenes100129515
SOURCE (Princeton)ETDB
Genetics Home Reference (NIH)ETDB
Genomic and cartography
GoldenPath hg38 (UCSC)ETDB  -     chrX:135118956-135120477 -  Xq26.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ETDB  -     Xq26.3   [Description]    (hg19-Feb_2009)
GoldenPathETDB - Xq26.3 [CytoView hg19]  ETDB - Xq26.3 [CytoView hg38]
ImmunoBaseENSG00000224107
Mapping of homologs : NCBIETDB [Mapview hg19]  ETDB [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI015085 AY730280 BX106414
RefSeq transcript (Entrez)NM_001355519
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ETDB
Cluster EST : UnigeneHs.522790 [ NCBI ]
CGAP (NCI)Hs.522790
Alternative Splicing GalleryENSG00000224107
Gene ExpressionETDB [ NCBI-GEO ]   ETDB [ EBI - ARRAY_EXPRESS ]   ETDB [ SEEK ]   ETDB [ MEM ]
Gene Expression Viewer (FireBrowse)ETDB [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100129515
GTEX Portal (Tissue expression)ETDB
Human Protein AtlasENSG00000224107-ETDB [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ETDB
DMDM Disease mutations100129515
Blocks (Seattle)ETDB
Human Protein Atlas [tissue]ENSG00000224107-ETDB [tissue]
IPIIPI00651669   
Protein Interaction databases
FunCoupENSG00000224107
BioGRIDETDB
STRING (EMBL)ETDB
ZODIACETDB
Ontologies - Pathways
Huge Navigator ETDB [HugePedia]
snp3D : Map Gene to Disease100129515
BioCentury BCIQETDB
ClinGenETDB
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100129515
Clinical trialETDB
Miscellaneous
canSAR (ICR)ETDB (select the gene name)
DataMed IndexETDB
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineETDB
EVEXETDB
GoPubMedETDB
iHOPETDB
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 15:27:07 CEST 2019
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