Atlas of Genetics and Cytogenetics in Oncology and Haematology

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EXOC1 (exocyst complex component 1)

Identity

Other namesBM-102
SEC3
SEC3L1
SEC3P
HGNC (Hugo) EXOC1
LocusID (NCBI) 55763
Location 4q12
Location_base_pair Starts at 56719816 and ends at 56771244 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)EXOC1   30380
Entrez_Gene (NCBI)EXOC1  55763  exocyst complex component 1
Cards
GeneCards (Weizmann)EXOC1
Ensembl (Hinxton)ENSG00000090989 [Gene_View]  chr4:56719816-56771244 [Contig_View]  EXOC1 [Vega]
AceView (NCBI)EXOC1
Genatlas (Paris)EXOC1
SOURCE (Stanford)NM_001024924 NM_018261 NM_178237
Genomic and cartography
GoldenPath (UCSC)EXOC1  -  4q12   chr4:56719816-56771244 +  4q12   [Description]    (hg19-Feb_2009)
EnsemblEXOC1 - 4q12 [CytoView]
Mapping of homologs : NCBIEXOC1 [Mapview]
OMIM607879   
Gene and transcription
Genbank (Entrez)AF208854 AK001755 AK023461 AK027047 AK027413
RefSeq transcript (SRS)NM_001024924 NM_018261 NM_178237
RefSeq transcript (Entrez)NM_001024924 NM_018261 NM_178237
RefSeq genomic (SRS)AC_000136 NC_000004 NC_018915 NT_022853 NW_001838913 NW_004078020
RefSeq genomic (Entrez)AC_000136 NC_000004 NC_018915 NT_022853 NW_001838913 NW_004078020
Consensus coding sequences : CCDS (NCBI)EXOC1
Cluster EST : UnigeneHs.269665 [ SRS ] Hs.269665 [ NCBI ]
CGAP (NCI)Hs.269665
Alternative Splicing : Fast-db (Paris)GSHG0022601
Alternative Splicing GalleryENSG00000090989
Gene ExpressionEXOC1 [ NCBI-GEO ]   EXOC1 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NV70 (SRS) Q9NV70 (Uniprot)
NextProtQ9NV70
With graphics : InterProQ9NV70
Splice isoforms : SwissVarQ9NV70(Swissvar)
Domains : Interpro (SRS)Exocyst_Exoc1   
Domains : Interpro (EBI)Exocyst_Exoc1   
Related proteins : CluSTrQ9NV70
Domain families : Pfam (SRS)Sec3 (PF09763)   
Domain families : Pfam (Sanger)Sec3 (PF09763)   
Domain families : Pfam (NCBI)pfam09763   
DMDM55763
Blocks (Seattle)Q9NV70
Human Protein AtlasENSG00000090989
HPRD07615
IPIIPI00019427   IPI00215762   
Protein Interaction databases
DIP (DOE-UCLA)Q9NV70
IntAct (EBI)Q9NV70
FunCoupENSG00000090989
REACTOMEEXOC1
Protein Interaction Database55763
BioGRIDEXOC1
InParanoidQ9NV70
Interologous Interaction database Q9NV70
IntegromeDBEXOC1
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)EXOC1
SNP (GeneSNP Utah)EXOC1
SNP : HGBaseEXOC1
Genetic variants : HAPMAPEXOC1
Somatic Mutations in Cancer : COSMICEXOC1 
CONAN: Copy Number AnalysisEXOC1 
Mutations and Diseases : HGMDEXOC1
OMIM607879   
GENETests607879   
Disease Genetic AssociationEXOC1
Huge Navigator EXOC1 [HugePedia]  EXOC1 [HugeCancerGEM]
Genomic VariantsEXOC1  EXOC1 [DGVbeta]
snp3D : Map Gene to Disease55763
General knowledge
Homologs : HomoloGeneEXOC1
Homology/Alignments : Family Browser (UCSC)EXOC1
Phylogenetic Trees/Animal Genes : TreeFamEXOC1
Chemical/Protein Interactions : CTD55763
Chemical/Pharm GKB GenePA134891660
Clinical trialEXOC1
Cancer Resource (Charite)ENSG00000090989
Ontology : AmiGOexocyst  plasma membrane  exocytosis  protein transport  
Ontology : EGO-EBIexocyst  plasma membrane  exocytosis  protein transport  
Other databases
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
PubGeneEXOC1
iHOPEXOC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:45:39 CEST 2013
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