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FAM160A1 (family with sequence similarity 160 member A1)

Identity

Alias (NCBI)-
HGNC (Hugo) FAM160A1
HGNC Alias symbFLJ43373
HGNC Previous namefamily with sequence similarity 160, member A1
LocusID (NCBI) 729830
Atlas_Id 63053
Location 4q31.3  [Link to chromosome band 4q31]
Location_base_pair Starts at 151409216 and ends at 151670503 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FAM160A1 (4q31.3) / DDX60 (4q32.3)FAM160A1 (4q31.3) / FAM160A1 (4q31.3)FAM160A1 (4q31.3) / IL15 (4q31.21)
NFKB1 (4q24) / FAM160A1 (4q31.3)FAM160A1 IL15FAM160A1 DDX60

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 3 ]
  t(4;4)(q24;q31) NFKB1/FAM160A1
FAM160A1/IL15 (4q31)
t(4;4)(q31;q32) FAM160A1/DDX60

External links

Nomenclature
HGNC (Hugo)FAM160A1   34237
Cards
Entrez_Gene (NCBI)FAM160A1    family with sequence similarity 160 member A1
Aliases
GeneCards (Weizmann)FAM160A1
Ensembl hg19 (Hinxton)ENSG00000164142 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164142 [Gene_View]  ENSG00000164142 [Sequence]  chr4:151409216-151670503 [Contig_View]  FAM160A1 [Vega]
ICGC DataPortalENSG00000164142
TCGA cBioPortalFAM160A1
AceView (NCBI)FAM160A1
Genatlas (Paris)FAM160A1
SOURCE (Princeton)FAM160A1
Genetics Home Reference (NIH)FAM160A1
Genomic and cartography
GoldenPath hg38 (UCSC)FAM160A1  -     chr4:151409216-151670503 +  4q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FAM160A1  -     4q31.3   [Description]    (hg19-Feb_2009)
GoldenPathFAM160A1 - 4q31.3 [CytoView hg19]  FAM160A1 - 4q31.3 [CytoView hg38]
ImmunoBaseENSG00000164142
genome Data Viewer NCBIFAM160A1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AA021504 AK125363 BC014937 CV410375 DA722299
RefSeq transcript (Entrez)NM_001109977 NM_001348694
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FAM160A1
Alternative Splicing GalleryENSG00000164142
Gene ExpressionFAM160A1 [ NCBI-GEO ]   FAM160A1 [ EBI - ARRAY_EXPRESS ]   FAM160A1 [ SEEK ]   FAM160A1 [ MEM ]
Gene Expression Viewer (FireBrowse)FAM160A1 [ Firebrowse - Broad ]
GenevisibleExpression of FAM160A1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)729830
GTEX Portal (Tissue expression)FAM160A1
Human Protein AtlasENSG00000164142-FAM160A1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ05DH4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ05DH4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ05DH4
Splice isoforms : SwissVarQ05DH4
PhosPhoSitePlusQ05DH4
Domains : Interpro (EBI)RetinoicA-induced_16-like   
Domain families : Pfam (Sanger)RAI16-like (PF10257)   
Domain families : Pfam (NCBI)pfam10257   
Conserved Domain (NCBI)FAM160A1
Blocks (Seattle)FAM160A1
SuperfamilyQ05DH4
Human Protein Atlas [tissue]ENSG00000164142-FAM160A1 [tissue]
Peptide AtlasQ05DH4
IPIIPI00872287   IPI00965095   IPI00965357   IPI00965540   IPI00964907   
Protein Interaction databases
DIP (DOE-UCLA)Q05DH4
IntAct (EBI)Q05DH4
BioGRIDFAM160A1
STRING (EMBL)FAM160A1
ZODIACFAM160A1
Ontologies - Pathways
QuickGOQ05DH4
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFAM160A1
Atlas of Cancer Signalling NetworkFAM160A1
Wikipedia pathwaysFAM160A1
Orthology - Evolution
OrthoDB729830
GeneTree (enSembl)ENSG00000164142
Phylogenetic Trees/Animal Genes : TreeFamFAM160A1
HOGENOMQ05DH4
Homologs : HomoloGeneFAM160A1
Homology/Alignments : Family Browser (UCSC)FAM160A1
Gene fusions - Rearrangements
Fusion PortalFAM160A1 IL15
Fusion PortalFAM160A1 DDX60
Fusion : QuiverFAM160A1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFAM160A1 [hg38]
dbVarFAM160A1
ClinVarFAM160A1
MonarchFAM160A1
1000_GenomesFAM160A1 
Exome Variant ServerFAM160A1
GNOMAD BrowserENSG00000164142
Varsome BrowserFAM160A1
Genomic Variants (DGV)FAM160A1 [DGVbeta]
DECIPHERFAM160A1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFAM160A1 
Mutations
ICGC Data PortalFAM160A1 
TCGA Data PortalFAM160A1 
Broad Tumor PortalFAM160A1
OASIS PortalFAM160A1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFAM160A1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DFAM160A1
Mutations and Diseases : HGMDFAM160A1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FAM160A1
DgiDB (Drug Gene Interaction Database)FAM160A1
DoCM (Curated mutations)FAM160A1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FAM160A1 (select a term)
intoGenFAM160A1
Cancer3DFAM160A1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETFAM160A1
MedgenFAM160A1
Genetic Testing Registry FAM160A1
NextProtQ05DH4 [Medical]
GENETestsFAM160A1
Target ValidationFAM160A1
Huge Navigator FAM160A1 [HugePedia]
ClinGenFAM160A1
Clinical trials, drugs, therapy
MyCancerGenomeFAM160A1
Protein Interactions : CTD
Pharm GKB GenePA162386739
Clinical trialFAM160A1
Miscellaneous
canSAR (ICR)FAM160A1 (select the gene name)
HarmonizomeFAM160A1
DataMed IndexFAM160A1
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFAM160A1
EVEXFAM160A1
GoPubMedFAM160A1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 16:53:37 CET 2020
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