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FBXO30 (F-box protein 30)

Identity

Other namesFbx30
HGNC (Hugo) FBXO30
LocusID (NCBI) 84085
Atlas_Id 40541
Location 6q24.3  [Link to chromosome band 6q24]
Location_base_pair Starts at 146119272 and ends at 146135921 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FBXO30   15600
Cards
Entrez_Gene (NCBI)FBXO30  84085  F-box protein 30
AliasesFbx30
GeneCards (Weizmann)FBXO30
Ensembl hg19 (Hinxton)ENSG00000118496 [Gene_View]  chr6:146119272-146135921 [Contig_View]  FBXO30 [Vega]
Ensembl hg38 (Hinxton)ENSG00000118496 [Gene_View]  chr6:146119272-146135921 [Contig_View]  FBXO30 [Vega]
ICGC DataPortalENSG00000118496
TCGA cBioPortalFBXO30
AceView (NCBI)FBXO30
Genatlas (Paris)FBXO30
WikiGenes84085
SOURCE (Princeton)FBXO30
Genomic and cartography
GoldenPath hg19 (UCSC)FBXO30  -     chr6:146119272-146135921 -  6q24.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)FBXO30  -     6q24.3   [Description]    (hg38-Dec_2013)
EnsemblFBXO30 - 6q24.3 [CytoView hg19]  FBXO30 - 6q24.3 [CytoView hg38]
Mapping of homologs : NCBIFBXO30 [Mapview hg19]  FBXO30 [Mapview hg38]
OMIM609101   
Gene and transcription
Genbank (Entrez)AF248640 AK055919 AK123026 AK124138 AK313613
RefSeq transcript (Entrez)NM_032145
RefSeq genomic (Entrez)NC_000006 NC_018917 NT_025741 NW_004929328
Consensus coding sequences : CCDS (NCBI)FBXO30
Cluster EST : UnigeneHs.421095 [ NCBI ]
CGAP (NCI)Hs.421095
Alternative Splicing GalleryENSG00000118496
Gene ExpressionFBXO30 [ NCBI-GEO ]   FBXO30 [ EBI - ARRAY_EXPRESS ]   FBXO30 [ SEEK ]   FBXO30 [ MEM ]
Gene Expression Viewer (FireBrowse)FBXO30 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84085
GTEX Portal (Tissue expression)FBXO30
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TB52 (Uniprot)
NextProtQ8TB52  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TB52
Splice isoforms : SwissVarQ8TB52 (Swissvar)
PhosPhoSitePlusQ8TB52
Domaine pattern : Prosite (Expaxy)FBOX (PS50181)    ZF_TRAF (PS50145)   
Domains : Interpro (EBI)F-box_dom    Fbxo30/Fbxo40    SIAH-type    TRAF-like    Znf_TRAF   
Domain families : Pfam (Sanger)F-box_4 (PF15966)    zf-TRAF_2 (PF15965)   
Domain families : Pfam (NCBI)pfam15966    pfam15965   
Domain families : Smart (EMBL)FBOX (SM00256)  
DMDM Disease mutations84085
Blocks (Seattle)FBXO30
PDB (SRS)2YRE   
PDB (PDBSum)2YRE   
PDB (IMB)2YRE   
PDB (RSDB)2YRE   
Structural Biology KnowledgeBase2YRE   
SCOP (Structural Classification of Proteins)2YRE   
CATH (Classification of proteins structures)2YRE   
SuperfamilyQ8TB52
Human Protein AtlasENSG00000118496
Peptide AtlasQ8TB52
HPRD10953
IPIIPI00290571   
Protein Interaction databases
DIP (DOE-UCLA)Q8TB52
IntAct (EBI)Q8TB52
FunCoupENSG00000118496
BioGRIDFBXO30
STRING (EMBL)FBXO30
ZODIACFBXO30
Ontologies - Pathways
QuickGOQ8TB52
Ontology : AmiGOzinc ion binding  protein ubiquitination  ubiquitin protein ligase activity  
Ontology : EGO-EBIzinc ion binding  protein ubiquitination  ubiquitin protein ligase activity  
NDEx Network
Atlas of Cancer Signalling NetworkFBXO30
Wikipedia pathwaysFBXO30
Orthology - Evolution
OrthoDB84085
GeneTree (enSembl)ENSG00000118496
Phylogenetic Trees/Animal Genes : TreeFamFBXO30
Homologs : HomoloGeneFBXO30
Homology/Alignments : Family Browser (UCSC)FBXO30
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerFBXO30 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FBXO30
dbVarFBXO30
ClinVarFBXO30
1000_GenomesFBXO30 
Exome Variant ServerFBXO30
ExAC (Exome Aggregation Consortium)FBXO30 (select the gene name)
Genetic variants : HAPMAP84085
Genomic Variants (DGV)FBXO30 [DGVbeta]
Mutations
ICGC Data PortalFBXO30 
TCGA Data PortalFBXO30 
Broad Tumor PortalFBXO30
OASIS PortalFBXO30 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFBXO30 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FBXO30
DgiDB (Drug Gene Interaction Database)FBXO30
DoCM (Curated mutations)FBXO30 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FBXO30 (select a term)
intoGenFBXO30
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)6:146119272-146135921  ENSG00000118496
CONAN: Copy Number AnalysisFBXO30 
Mutations and Diseases : HGMDFBXO30
OMIM609101   
MedgenFBXO30
Genetic Testing Registry FBXO30
NextProtQ8TB52 [Medical]
TSGene84085
GENETestsFBXO30
Huge Navigator FBXO30 [HugePedia]
snp3D : Map Gene to Disease84085
BioCentury BCIQFBXO30
ClinGenFBXO30
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84085
Chemical/Pharm GKB GenePA28041
Clinical trialFBXO30
Miscellaneous
canSAR (ICR)FBXO30 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFBXO30
EVEXFBXO30
GoPubMedFBXO30
iHOPFBXO30
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 9 19:28:39 CEST 2016

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