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FBXO30 (F-box protein 30)

Identity

Alias_namesF-box only protein
Alias_symbol (synonym)MGC21674
Fbx30
Other alias
HGNC (Hugo) FBXO30
LocusID (NCBI) 84085
Atlas_Id 40541
Location 6q24.3  [Link to chromosome band 6q24]
Location_base_pair Starts at 145798136 and ends at 145814785 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)FBXO30   15600
Cards
Entrez_Gene (NCBI)FBXO30  84085  F-box protein 30
AliasesFbx30
GeneCards (Weizmann)FBXO30
Ensembl hg19 (Hinxton)ENSG00000118496 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000118496 [Gene_View]  chr6:145798136-145814785 [Contig_View]  FBXO30 [Vega]
ICGC DataPortalENSG00000118496
TCGA cBioPortalFBXO30
AceView (NCBI)FBXO30
Genatlas (Paris)FBXO30
WikiGenes84085
SOURCE (Princeton)FBXO30
Genetics Home Reference (NIH)FBXO30
Genomic and cartography
GoldenPath hg38 (UCSC)FBXO30  -     chr6:145798136-145814785 -  6q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FBXO30  -     6q24.3   [Description]    (hg19-Feb_2009)
EnsemblFBXO30 - 6q24.3 [CytoView hg19]  FBXO30 - 6q24.3 [CytoView hg38]
Mapping of homologs : NCBIFBXO30 [Mapview hg19]  FBXO30 [Mapview hg38]
OMIM609101   
Gene and transcription
Genbank (Entrez)AF248640 AK055919 AK123026 AK124138 AK313613
RefSeq transcript (Entrez)NM_001348092 NM_032145
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FBXO30
Cluster EST : UnigeneHs.421095 [ NCBI ]
CGAP (NCI)Hs.421095
Alternative Splicing GalleryENSG00000118496
Gene ExpressionFBXO30 [ NCBI-GEO ]   FBXO30 [ EBI - ARRAY_EXPRESS ]   FBXO30 [ SEEK ]   FBXO30 [ MEM ]
Gene Expression Viewer (FireBrowse)FBXO30 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84085
GTEX Portal (Tissue expression)FBXO30
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TB52   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TB52  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TB52
Splice isoforms : SwissVarQ8TB52
PhosPhoSitePlusQ8TB52
Domaine pattern : Prosite (Expaxy)FBOX (PS50181)    ZF_TRAF (PS50145)   
Domains : Interpro (EBI)F-box_dom    Fbxo30/Fbxo40    SIAH-type    TRAF-like    Znf_TRAF   
Domain families : Pfam (Sanger)F-box_4 (PF15966)    zf-TRAF_2 (PF15965)   
Domain families : Pfam (NCBI)pfam15966    pfam15965   
Conserved Domain (NCBI)FBXO30
DMDM Disease mutations84085
Blocks (Seattle)FBXO30
PDB (SRS)2YRE   
PDB (PDBSum)2YRE   
PDB (IMB)2YRE   
PDB (RSDB)2YRE   
Structural Biology KnowledgeBase2YRE   
SCOP (Structural Classification of Proteins)2YRE   
CATH (Classification of proteins structures)2YRE   
SuperfamilyQ8TB52
Human Protein AtlasENSG00000118496
Peptide AtlasQ8TB52
HPRD10953
IPIIPI00290571   
Protein Interaction databases
DIP (DOE-UCLA)Q8TB52
IntAct (EBI)Q8TB52
FunCoupENSG00000118496
BioGRIDFBXO30
STRING (EMBL)FBXO30
ZODIACFBXO30
Ontologies - Pathways
QuickGOQ8TB52
Ontology : AmiGOprotein polyubiquitination  ubiquitin-protein transferase activity  ubiquitin-protein transferase activity  cytosol  zinc ion binding  ubiquitin protein ligase activity  
Ontology : EGO-EBIprotein polyubiquitination  ubiquitin-protein transferase activity  ubiquitin-protein transferase activity  cytosol  zinc ion binding  ubiquitin protein ligase activity  
NDEx NetworkFBXO30
Atlas of Cancer Signalling NetworkFBXO30
Wikipedia pathwaysFBXO30
Orthology - Evolution
OrthoDB84085
GeneTree (enSembl)ENSG00000118496
Phylogenetic Trees/Animal Genes : TreeFamFBXO30
HOVERGENQ8TB52
HOGENOMQ8TB52
Homologs : HomoloGeneFBXO30
Homology/Alignments : Family Browser (UCSC)FBXO30
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFBXO30 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FBXO30
dbVarFBXO30
ClinVarFBXO30
1000_GenomesFBXO30 
Exome Variant ServerFBXO30
ExAC (Exome Aggregation Consortium)FBXO30 (select the gene name)
Genetic variants : HAPMAP84085
Genomic Variants (DGV)FBXO30 [DGVbeta]
DECIPHERFBXO30 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFBXO30 
Mutations
ICGC Data PortalFBXO30 
TCGA Data PortalFBXO30 
Broad Tumor PortalFBXO30
OASIS PortalFBXO30 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICFBXO30  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFBXO30
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FBXO30
DgiDB (Drug Gene Interaction Database)FBXO30
DoCM (Curated mutations)FBXO30 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FBXO30 (select a term)
intoGenFBXO30
Cancer3DFBXO30(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609101   
Orphanet
MedgenFBXO30
Genetic Testing Registry FBXO30
NextProtQ8TB52 [Medical]
TSGene84085
GENETestsFBXO30
Huge Navigator FBXO30 [HugePedia]
snp3D : Map Gene to Disease84085
BioCentury BCIQFBXO30
ClinGenFBXO30
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84085
Chemical/Pharm GKB GenePA28041
Clinical trialFBXO30
Miscellaneous
canSAR (ICR)FBXO30 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFBXO30
EVEXFBXO30
GoPubMedFBXO30
iHOPFBXO30
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:15:40 CEST 2017

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