Atlas of Genetics and Cytogenetics in Oncology and Haematology


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FBXO30 (F-box protein 30)

Identity

Other namesFbx30
HGNC (Hugo) FBXO30
LocusID (NCBI) 84085
Location 6q24.3
Location_base_pair Starts at 146119272 and ends at 146135921 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)FBXO30   15600
Cards
Entrez_Gene (NCBI)FBXO30  84085  F-box protein 30
GeneCards (Weizmann)FBXO30
Ensembl (Hinxton) [Gene_View]  chr6:146119272-146135921 [Contig_View]  FBXO30 [Vega]
AceView (NCBI)FBXO30
Genatlas (Paris)FBXO30
WikiGenes84085
SOURCE (Princeton)NM_032145
Genomic and cartography
GoldenPath (UCSC)FBXO30  -  6q24.3   chr6:146119272-146135921 -  6q24.3   [Description]    (hg19-Feb_2009)
EnsemblFBXO30 - 6q24.3 [CytoView]
Mapping of homologs : NCBIFBXO30 [Mapview]
OMIM609101   
Gene and transcription
Genbank (Entrez)AF248640 AK055919 AK123026 AK124138 AK313613
RefSeq transcript (Entrez)NM_032145
RefSeq genomic (Entrez)AC_000138 NC_000006 NC_018917 NT_025741 NW_001838990 NW_004929328
Consensus coding sequences : CCDS (NCBI)FBXO30
Cluster EST : UnigeneHs.421095 [ NCBI ]
CGAP (NCI)Hs.421095
Alternative Splicing : Fast-db (Paris)GSHG0026978
Gene ExpressionFBXO30 [ NCBI-GEO ]     FBXO30 [ SEEK ]   FBXO30 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TB52 (Uniprot)
NextProtQ8TB52  [Medical]
With graphics : InterProQ8TB52
Splice isoforms : SwissVarQ8TB52 (Swissvar)
Domaine pattern : Prosite (Expaxy)FBOX (PS50181)    ZF_TRAF (PS50145)   
Domains : Interpro (EBI)F-box_dom    SIAH-type    TRAF-like    Znf_TRAF   
Related proteins : CluSTrQ8TB52
Domain families : Pfam (Sanger)F-box (PF00646)   
Domain families : Pfam (NCBI)pfam00646   
Domain families : Smart (EMBL)FBOX (SM00256)  
DMDM Disease mutations84085
Blocks (Seattle)Q8TB52
PDB (SRS)2YRE   
PDB (PDBSum)2YRE   
PDB (IMB)2YRE   
PDB (RSDB)2YRE   
Peptide AtlasQ8TB52
HPRD10953
IPIIPI00290571   
Protein Interaction databases
DIP (DOE-UCLA)Q8TB52
IntAct (EBI)Q8TB52
BioGRIDFBXO30
InParanoidQ8TB52
Interologous Interaction database Q8TB52
IntegromeDBFBXO30
STRING (EMBL)FBXO30
Ontologies - Pathways
Ontology : AmiGOubiquitin-protein ligase activity  zinc ion binding  
Ontology : EGO-EBIubiquitin-protein ligase activity  zinc ion binding  
REACTOMEFBXO30
Protein Interaction DatabaseFBXO30
Wikipedia pathwaysFBXO30
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)FBXO30
SNP (GeneSNP Utah)FBXO30
SNP : HGBaseFBXO30
Genetic variants : HAPMAPFBXO30
1000_GenomesFBXO30 
Somatic Mutations in Cancer : COSMICFBXO30 
CONAN: Copy Number AnalysisFBXO30 
Mutations and Diseases : HGMDFBXO30
OMIM609101   
GENETestsFBXO30
Disease Genetic AssociationFBXO30
Huge Navigator FBXO30 [HugePedia]  FBXO30 [HugeCancerGEM]
Genomic VariantsFBXO30  FBXO30 [DGVbeta]
Exome VariantFBXO30
dbVarFBXO30
ClinVarFBXO30
snp3D : Map Gene to Disease84085
General knowledge
Homologs : HomoloGeneFBXO30
Homology/Alignments : Family Browser (UCSC)FBXO30
Phylogenetic Trees/Animal Genes : TreeFamFBXO30
Chemical/Protein Interactions : CTD84085
Chemical/Pharm GKB GenePA28041
Clinical trialFBXO30
Other databases
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
CoreMineFBXO30
iHOPFBXO30
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Apr 18 17:13:58 CEST 2014

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