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FLVCR1-DT (FLVCR1 divergent transcript)

Identity

Alias_namesNCRNA00292
FLVCR1-AS1
non-protein coding RNA 292
FLVCR1 antisense RNA 1 (non-protein coding)
FLVCR1 antisense RNA 1
FLVCR1 antisense RNA 1 (head to head)
Alias_symbol (synonym)LQK1
Other alias
HGNC (Hugo) FLVCR1-DT
LocusID (NCBI) 642946
Atlas_Id 58018
Location 1q32.3  [Link to chromosome band 1q32]
Location_base_pair Starts at 212856604 and ends at 212858138 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)FLVCR1-DT   39077
Cards
Entrez_Gene (NCBI)FLVCR1-DT  642946  FLVCR1 divergent transcript
AliasesFLVCR1-AS1; LQK1; NCRNA00292
GeneCards (Weizmann)FLVCR1-DT
Ensembl hg19 (Hinxton)ENSG00000198468 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198468 [Gene_View]  ENSG00000198468 [Sequence]  chr1:212856604-212858138 [Contig_View]  FLVCR1-DT [Vega]
ICGC DataPortalENSG00000198468
TCGA cBioPortalFLVCR1-DT
AceView (NCBI)FLVCR1-DT
Genatlas (Paris)FLVCR1-DT
WikiGenes642946
SOURCE (Princeton)FLVCR1-DT
Genetics Home Reference (NIH)FLVCR1-DT
Genomic and cartography
GoldenPath hg38 (UCSC)FLVCR1-DT  -     chr1:212856604-212858138 -  1q32.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)FLVCR1-DT  -     1q32.3   [Description]    (hg19-Feb_2009)
GoldenPathFLVCR1-DT - 1q32.3 [CytoView hg19]  FLVCR1-DT - 1q32.3 [CytoView hg38]
ImmunoBaseENSG00000198468
Mapping of homologs : NCBIFLVCR1-DT [Mapview hg19]  FLVCR1-DT [Mapview hg38]
OMIM610864   
Gene and transcription
Genbank (Entrez)AK092887 AY030238 AY030239
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)FLVCR1-DT
Cluster EST : UnigeneHs.552649 [ NCBI ]
CGAP (NCI)Hs.552649
Alternative Splicing GalleryENSG00000198468
Gene ExpressionFLVCR1-DT [ NCBI-GEO ]   FLVCR1-DT [ EBI - ARRAY_EXPRESS ]   FLVCR1-DT [ SEEK ]   FLVCR1-DT [ MEM ]
Gene Expression Viewer (FireBrowse)FLVCR1-DT [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)642946
GTEX Portal (Tissue expression)FLVCR1-DT
Human Protein AtlasENSG00000198468-FLVCR1-DT [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TAF5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TAF5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TAF5
Splice isoforms : SwissVarQ8TAF5
PhosPhoSitePlusQ8TAF5
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)FLVCR1-DT
DMDM Disease mutations642946
Blocks (Seattle)FLVCR1-DT
SuperfamilyQ8TAF5
Human Protein Atlas [tissue]ENSG00000198468-FLVCR1-DT [tissue]
Peptide AtlasQ8TAF5
IPIIPI00152052   
Protein Interaction databases
DIP (DOE-UCLA)Q8TAF5
IntAct (EBI)Q8TAF5
FunCoupENSG00000198468
BioGRIDFLVCR1-DT
STRING (EMBL)FLVCR1-DT
ZODIACFLVCR1-DT
Ontologies - Pathways
QuickGOQ8TAF5
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkFLVCR1-DT
Atlas of Cancer Signalling NetworkFLVCR1-DT
Wikipedia pathwaysFLVCR1-DT
Orthology - Evolution
OrthoDB642946
GeneTree (enSembl)ENSG00000198468
Phylogenetic Trees/Animal Genes : TreeFamFLVCR1-DT
HOGENOMQ8TAF5
Homologs : HomoloGeneFLVCR1-DT
Homology/Alignments : Family Browser (UCSC)FLVCR1-DT
Gene fusions - Rearrangements
Fusion : QuiverFLVCR1-DT
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerFLVCR1-DT [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)FLVCR1-DT
dbVarFLVCR1-DT
ClinVarFLVCR1-DT
1000_GenomesFLVCR1-DT 
Exome Variant ServerFLVCR1-DT
ExAC (Exome Aggregation Consortium)ENSG00000198468
GNOMAD BrowserENSG00000198468
Varsome BrowserFLVCR1-DT
Genetic variants : HAPMAP642946
Genomic Variants (DGV)FLVCR1-DT [DGVbeta]
DECIPHERFLVCR1-DT [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisFLVCR1-DT 
Mutations
ICGC Data PortalFLVCR1-DT 
TCGA Data PortalFLVCR1-DT 
Broad Tumor PortalFLVCR1-DT
OASIS PortalFLVCR1-DT [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDFLVCR1-DT
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch FLVCR1-DT
DgiDB (Drug Gene Interaction Database)FLVCR1-DT
DoCM (Curated mutations)FLVCR1-DT (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)FLVCR1-DT (select a term)
intoGenFLVCR1-DT
Cancer3DFLVCR1-DT(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610864   
Orphanet
DisGeNETFLVCR1-DT
MedgenFLVCR1-DT
Genetic Testing Registry FLVCR1-DT
NextProtQ8TAF5 [Medical]
TSGene642946
GENETestsFLVCR1-DT
Target ValidationFLVCR1-DT
Huge Navigator FLVCR1-DT [HugePedia]
snp3D : Map Gene to Disease642946
BioCentury BCIQFLVCR1-DT
ClinGenFLVCR1-DT
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD642946
Clinical trialFLVCR1-DT
Miscellaneous
canSAR (ICR)FLVCR1-DT (select the gene name)
DataMed IndexFLVCR1-DT
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineFLVCR1-DT
EVEXFLVCR1-DT
GoPubMedFLVCR1-DT
iHOPFLVCR1-DT
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Nov 13 17:43:39 CET 2019

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