Atlas of Genetics and Cytogenetics in Oncology and Haematology

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GACAT2 (gastric cancer associated transcript 2)

Identity

Alias (NCBI)MTCL1-AS1
MTCL1AS1
HGNC (Hugo) GACAT2
HGNC Alias symbHMlincRNA717
HGNC Previous nameMTCL1-AS1
HGNC Previous nameMTCL1 antisense RNA 1
 gastric cancer associated transcript 2 (non-protein coding)
LocusID (NCBI) 100287082
Atlas_Id 54035
Location 18p11.22  [Link to chromosome band 18p11]
Location_base_pair Starts at 8695856 and ends at 8707621 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)GACAT2   50516
Cards
Entrez_Gene (NCBI)GACAT2  100287082  gastric cancer associated transcript 2
AliasesMTCL1-AS1; MTCL1AS1
GeneCards (Weizmann)GACAT2
Ensembl hg19 (Hinxton)ENSG00000265962 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000265962 [Gene_View]  ENSG00000265962 [Sequence]  chr18:8695856-8707621 [Contig_View]  GACAT2 [Vega]
ICGC DataPortalENSG00000265962
TCGA cBioPortalGACAT2
AceView (NCBI)GACAT2
Genatlas (Paris)GACAT2
WikiGenes100287082
SOURCE (Princeton)GACAT2
Genetics Home Reference (NIH)GACAT2
Genomic and cartography
GoldenPath hg38 (UCSC)GACAT2  -     chr18:8695856-8707621 -  18p11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GACAT2  -     18p11.22   [Description]    (hg19-Feb_2009)
GoldenPathGACAT2 - 18p11.22 [CytoView hg19]  GACAT2 - 18p11.22 [CytoView hg38]
ImmunoBaseENSG00000265962
genome Data Viewer NCBIGACAT2 [Mapview hg19]  
OMIM616131   
Gene and transcription
Genbank (Entrez)BM717007 BQ026945
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GACAT2
Alternative Splicing GalleryENSG00000265962
Gene ExpressionGACAT2 [ NCBI-GEO ]   GACAT2 [ EBI - ARRAY_EXPRESS ]   GACAT2 [ SEEK ]   GACAT2 [ MEM ]
Gene Expression Viewer (FireBrowse)GACAT2 [ Firebrowse - Broad ]
GenevisibleExpression of GACAT2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100287082
GTEX Portal (Tissue expression)GACAT2
Human Protein AtlasENSG00000265962-GACAT2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)GACAT2
DMDM Disease mutations100287082
Blocks (Seattle)GACAT2
Human Protein Atlas [tissue]ENSG00000265962-GACAT2 [tissue]
Protein Interaction databases
FunCoupENSG00000265962
BioGRIDGACAT2
STRING (EMBL)GACAT2
ZODIACGACAT2
Ontologies - Pathways
Huge Navigator GACAT2 [HugePedia]
snp3D : Map Gene to Disease100287082
BioCentury BCIQGACAT2
ClinGenGACAT2
Clinical trials, drugs, therapy
Protein Interactions : CTD100287082
Clinical trialGACAT2
Miscellaneous
canSAR (ICR)GACAT2 (select the gene name)
HarmonizomeGACAT2
DataMed IndexGACAT2
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGACAT2
EVEXGACAT2
GoPubMedGACAT2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jul 16 15:14:16 CEST 2020
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