Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

GAL3ST2 (galactose-3-O-sulfotransferase 2)

Identity

Alias_symbol (synonym)GP3ST
Other aliasGAL3ST-2
HGNC (Hugo) GAL3ST2
LocusID (NCBI) 64090
Atlas_Id 46250
Location 2q37.3  [Link to chromosome band 2q37]
Location_base_pair Starts at 241776825 and ends at 241804287 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
D2HGDH (2q37.3) / GAL3ST2 (2q37.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)GAL3ST2   24869
Cards
Entrez_Gene (NCBI)GAL3ST2  64090  galactose-3-O-sulfotransferase 2
AliasesGAL3ST-2; GP3ST
GeneCards (Weizmann)GAL3ST2
Ensembl hg19 (Hinxton)ENSG00000154252 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000154252 [Gene_View]  ENSG00000154252 [Sequence]  chr2:241776825-241804287 [Contig_View]  GAL3ST2 [Vega]
ICGC DataPortalENSG00000154252
TCGA cBioPortalGAL3ST2
AceView (NCBI)GAL3ST2
Genatlas (Paris)GAL3ST2
WikiGenes64090
SOURCE (Princeton)GAL3ST2
Genetics Home Reference (NIH)GAL3ST2
Genomic and cartography
GoldenPath hg38 (UCSC)GAL3ST2  -     chr2:241776825-241804287 +  2q37.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GAL3ST2  -     2q37.3   [Description]    (hg19-Feb_2009)
GoldenPathGAL3ST2 - 2q37.3 [CytoView hg19]  GAL3ST2 - 2q37.3 [CytoView hg38]
ImmunoBaseENSG00000154252
Mapping of homologs : NCBIGAL3ST2 [Mapview hg19]  GAL3ST2 [Mapview hg38]
OMIM608237   
Gene and transcription
Genbank (Entrez)AB040610 BC117293 BC117295
RefSeq transcript (Entrez)NM_022134
RefSeq genomic (Entrez)NC_000002 NG_046977 NT_187527
Consensus coding sequences : CCDS (NCBI)GAL3ST2
Cluster EST : UnigeneHs.632556 [ NCBI ]
CGAP (NCI)Hs.632556
Alternative Splicing GalleryENSG00000154252
Gene ExpressionGAL3ST2 [ NCBI-GEO ]   GAL3ST2 [ EBI - ARRAY_EXPRESS ]   GAL3ST2 [ SEEK ]   GAL3ST2 [ MEM ]
Gene Expression Viewer (FireBrowse)GAL3ST2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64090
GTEX Portal (Tissue expression)GAL3ST2
Human Protein AtlasENSG00000154252-GAL3ST2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H3Q3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H3Q3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H3Q3
Splice isoforms : SwissVarQ9H3Q3
PhosPhoSitePlusQ9H3Q3
Domains : Interpro (EBI)Gal-3-0_sulfotransfrase    P-loop_NTPase   
Domain families : Pfam (Sanger)Gal-3-0_sulfotr (PF06990)   
Domain families : Pfam (NCBI)pfam06990   
Conserved Domain (NCBI)GAL3ST2
DMDM Disease mutations64090
Blocks (Seattle)GAL3ST2
SuperfamilyQ9H3Q3
Human Protein Atlas [tissue]ENSG00000154252-GAL3ST2 [tissue]
Peptide AtlasQ9H3Q3
HPRD16303
IPIIPI00301475   
Protein Interaction databases
DIP (DOE-UCLA)Q9H3Q3
IntAct (EBI)Q9H3Q3
FunCoupENSG00000154252
BioGRIDGAL3ST2
STRING (EMBL)GAL3ST2
ZODIACGAL3ST2
Ontologies - Pathways
QuickGOQ9H3Q3
Ontology : AmiGOgalactosylceramide sulfotransferase activity  protein binding  sulfotransferase activity  biological_process  glycolipid biosynthetic process  membrane  integral component of membrane  Golgi cisterna membrane  
Ontology : EGO-EBIgalactosylceramide sulfotransferase activity  protein binding  sulfotransferase activity  biological_process  glycolipid biosynthetic process  membrane  integral component of membrane  Golgi cisterna membrane  
NDEx NetworkGAL3ST2
Atlas of Cancer Signalling NetworkGAL3ST2
Wikipedia pathwaysGAL3ST2
Orthology - Evolution
OrthoDB64090
GeneTree (enSembl)ENSG00000154252
Phylogenetic Trees/Animal Genes : TreeFamGAL3ST2
HOGENOMQ9H3Q3
Homologs : HomoloGeneGAL3ST2
Homology/Alignments : Family Browser (UCSC)GAL3ST2
Gene fusions - Rearrangements
Fusion : QuiverGAL3ST2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGAL3ST2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GAL3ST2
dbVarGAL3ST2
ClinVarGAL3ST2
1000_GenomesGAL3ST2 
Exome Variant ServerGAL3ST2
ExAC (Exome Aggregation Consortium)ENSG00000154252
GNOMAD BrowserENSG00000154252
Varsome BrowserGAL3ST2
Genetic variants : HAPMAP64090
Genomic Variants (DGV)GAL3ST2 [DGVbeta]
DECIPHERGAL3ST2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGAL3ST2 
Mutations
ICGC Data PortalGAL3ST2 
TCGA Data PortalGAL3ST2 
Broad Tumor PortalGAL3ST2
OASIS PortalGAL3ST2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGAL3ST2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DGAL3ST2
Mutations and Diseases : HGMDGAL3ST2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GAL3ST2
DgiDB (Drug Gene Interaction Database)GAL3ST2
DoCM (Curated mutations)GAL3ST2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GAL3ST2 (select a term)
intoGenGAL3ST2
Cancer3DGAL3ST2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608237   
Orphanet
DisGeNETGAL3ST2
MedgenGAL3ST2
Genetic Testing Registry GAL3ST2
NextProtQ9H3Q3 [Medical]
TSGene64090
GENETestsGAL3ST2
Target ValidationGAL3ST2
Huge Navigator GAL3ST2 [HugePedia]
snp3D : Map Gene to Disease64090
BioCentury BCIQGAL3ST2
ClinGenGAL3ST2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64090
Chemical/Pharm GKB GenePA134913637
Clinical trialGAL3ST2
Miscellaneous
canSAR (ICR)GAL3ST2 (select the gene name)
DataMed IndexGAL3ST2
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGAL3ST2
EVEXGAL3ST2
GoPubMedGAL3ST2
iHOPGAL3ST2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Nov 13 17:44:22 CET 2019
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.