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GALNT7 (polypeptide N-acetylgalactosaminyltransferase 7)

Identity

Alias_namesUDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7)
Alias_symbol (synonym)GALNAC-T7
Other aliasGalNAcT7
HGNC (Hugo) GALNT7
LocusID (NCBI) 51809
Atlas_Id 52386
Location 4q34.1  [Link to chromosome band 4q34]
Location_base_pair Starts at 173168753 and ends at 173323967 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
GALNT7 (4q34.1) / CMAS (12p12.1)GALNT7 (4q34.1) / COL1A2 (7q21.3)GALNT7 (4q34.1) / ORC4 (2q22.3)
GALNT7 (4q34.1) / SAP30 (4q34.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(2;4)(q23;q34) GALNT7/ORC4

External links

Nomenclature
HGNC (Hugo)GALNT7   4129
Cards
Entrez_Gene (NCBI)GALNT7  51809  polypeptide N-acetylgalactosaminyltransferase 7
AliasesGALNAC-T7; GalNAcT7
GeneCards (Weizmann)GALNT7
Ensembl hg19 (Hinxton)ENSG00000109586 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000109586 [Gene_View]  ENSG00000109586 [Sequence]  chr4:173168753-173323967 [Contig_View]  GALNT7 [Vega]
ICGC DataPortalENSG00000109586
TCGA cBioPortalGALNT7
AceView (NCBI)GALNT7
Genatlas (Paris)GALNT7
WikiGenes51809
SOURCE (Princeton)GALNT7
Genetics Home Reference (NIH)GALNT7
Genomic and cartography
GoldenPath hg38 (UCSC)GALNT7  -     chr4:173168753-173323967 +  4q34.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GALNT7  -     4q34.1   [Description]    (hg19-Feb_2009)
GoldenPathGALNT7 - 4q34.1 [CytoView hg19]  GALNT7 - 4q34.1 [CytoView hg38]
ImmunoBaseENSG00000109586
Mapping of homologs : NCBIGALNT7 [Mapview hg19]  GALNT7 [Mapview hg38]
OMIM605005   
Gene and transcription
Genbank (Entrez)AJ002744 AJ505958 AK128437 AK295509 BC020541
RefSeq transcript (Entrez)NM_017423
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GALNT7
Cluster EST : UnigeneHs.548088 [ NCBI ]
CGAP (NCI)Hs.548088
Alternative Splicing GalleryENSG00000109586
Gene ExpressionGALNT7 [ NCBI-GEO ]   GALNT7 [ EBI - ARRAY_EXPRESS ]   GALNT7 [ SEEK ]   GALNT7 [ MEM ]
Gene Expression Viewer (FireBrowse)GALNT7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51809
GTEX Portal (Tissue expression)GALNT7
Human Protein AtlasENSG00000109586-GALNT7 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86SF2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86SF2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86SF2
Splice isoforms : SwissVarQ86SF2
PhosPhoSitePlusQ86SF2
Domaine pattern : Prosite (Expaxy)RICIN_B_LECTIN (PS50231)   
Domains : Interpro (EBI)Glyco_trans_2-like    Nucleotide-diphossugar_trans    Ricin_B-like_lectins    Ricin_B_lectin   
Domain families : Pfam (Sanger)Glycos_transf_2 (PF00535)    Ricin_B_lectin (PF00652)   
Domain families : Pfam (NCBI)pfam00535    pfam00652   
Domain families : Smart (EMBL)RICIN (SM00458)  
Conserved Domain (NCBI)GALNT7
DMDM Disease mutations51809
Blocks (Seattle)GALNT7
SuperfamilyQ86SF2
Human Protein Atlas [tissue]ENSG00000109586-GALNT7 [tissue]
Peptide AtlasQ86SF2
HPRD10386
IPIIPI00328391   IPI00910084   IPI00965812   IPI00964075   IPI00965522   
Protein Interaction databases
DIP (DOE-UCLA)Q86SF2
IntAct (EBI)Q86SF2
FunCoupENSG00000109586
BioGRIDGALNT7
STRING (EMBL)GALNT7
ZODIACGALNT7
Ontologies - Pathways
QuickGOQ86SF2
Ontology : AmiGOGolgi membrane  polypeptide N-acetylgalactosaminyltransferase activity  Golgi apparatus  carbohydrate metabolic process  protein O-linked glycosylation  membrane  integral component of membrane  O-glycan processing  carbohydrate binding  metal ion binding  extracellular exosome  
Ontology : EGO-EBIGolgi membrane  polypeptide N-acetylgalactosaminyltransferase activity  Golgi apparatus  carbohydrate metabolic process  protein O-linked glycosylation  membrane  integral component of membrane  O-glycan processing  carbohydrate binding  metal ion binding  extracellular exosome  
Pathways : KEGGMucin type O-Glycan biosynthesis   
NDEx NetworkGALNT7
Atlas of Cancer Signalling NetworkGALNT7
Wikipedia pathwaysGALNT7
Orthology - Evolution
OrthoDB51809
GeneTree (enSembl)ENSG00000109586
Phylogenetic Trees/Animal Genes : TreeFamGALNT7
HOGENOMQ86SF2
Homologs : HomoloGeneGALNT7
Homology/Alignments : Family Browser (UCSC)GALNT7
Gene fusions - Rearrangements
Fusion : MitelmanGALNT7/ORC4 [4q34.1/2q22.3]  
Fusion : QuiverGALNT7
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGALNT7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GALNT7
dbVarGALNT7
ClinVarGALNT7
1000_GenomesGALNT7 
Exome Variant ServerGALNT7
ExAC (Exome Aggregation Consortium)ENSG00000109586
GNOMAD BrowserENSG00000109586
Varsome BrowserGALNT7
Genetic variants : HAPMAP51809
Genomic Variants (DGV)GALNT7 [DGVbeta]
DECIPHERGALNT7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGALNT7 
Mutations
ICGC Data PortalGALNT7 
TCGA Data PortalGALNT7 
Broad Tumor PortalGALNT7
OASIS PortalGALNT7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGALNT7  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DGALNT7
Mutations and Diseases : HGMDGALNT7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GALNT7
DgiDB (Drug Gene Interaction Database)GALNT7
DoCM (Curated mutations)GALNT7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GALNT7 (select a term)
intoGenGALNT7
Cancer3DGALNT7(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605005   
Orphanet
DisGeNETGALNT7
MedgenGALNT7
Genetic Testing Registry GALNT7
NextProtQ86SF2 [Medical]
TSGene51809
GENETestsGALNT7
Target ValidationGALNT7
Huge Navigator GALNT7 [HugePedia]
snp3D : Map Gene to Disease51809
BioCentury BCIQGALNT7
ClinGenGALNT7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51809
Chemical/Pharm GKB GenePA28542
Clinical trialGALNT7
Miscellaneous
canSAR (ICR)GALNT7 (select the gene name)
DataMed IndexGALNT7
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGALNT7
EVEXGALNT7
GoPubMedGALNT7
iHOPGALNT7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Wed Nov 13 17:44:25 CET 2019
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