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GALNT9 (polypeptide N-acetylgalactosaminyltransferase 9)

Identity

Alias_namesUDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9 (GalNAc-T9)
Alias_symbol (synonym)GALNAC-T9
Other aliasGALNACT9
HGNC (Hugo) GALNT9
LocusID (NCBI) 50614
Atlas_Id 63690
Location 12q24.33  [Link to chromosome band 12q24]
Location_base_pair Starts at 132196372 and ends at 132329319 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CCDC64 (12q24.23) / GALNT9 (12q24.33)FBRSL1 (12q24.33) / GALNT9 (12q24.33)TMEM132D (12q24.33) / GALNT9 (12q24.33)
CCDC64 GALNT9TMEM132D GALNT9FBRSL1 GALNT9

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)GALNT9   4131
Cards
Entrez_Gene (NCBI)GALNT9  50614  polypeptide N-acetylgalactosaminyltransferase 9
AliasesGALNAC-T9; GALNACT9
GeneCards (Weizmann)GALNT9
Ensembl hg19 (Hinxton)ENSG00000182870 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182870 [Gene_View]  ENSG00000182870 [Sequence]  chr12:132196372-132329319 [Contig_View]  GALNT9 [Vega]
ICGC DataPortalENSG00000182870
TCGA cBioPortalGALNT9
AceView (NCBI)GALNT9
Genatlas (Paris)GALNT9
WikiGenes50614
SOURCE (Princeton)GALNT9
Genetics Home Reference (NIH)GALNT9
Genomic and cartography
GoldenPath hg38 (UCSC)GALNT9  -     chr12:132196372-132329319 -  12q24.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GALNT9  -     12q24.33   [Description]    (hg19-Feb_2009)
GoldenPathGALNT9 - 12q24.33 [CytoView hg19]  GALNT9 - 12q24.33 [CytoView hg38]
ImmunoBaseENSG00000182870
Mapping of homologs : NCBIGALNT9 [Mapview hg19]  GALNT9 [Mapview hg38]
OMIM606251   
Gene and transcription
Genbank (Entrez)AB040672 AF458594 AJ505960 AK054820 AK055773
RefSeq transcript (Entrez)NM_001122636 NM_021808
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GALNT9
Cluster EST : UnigeneHs.658249 [ NCBI ]
CGAP (NCI)Hs.658249
Alternative Splicing GalleryENSG00000182870
Gene ExpressionGALNT9 [ NCBI-GEO ]   GALNT9 [ EBI - ARRAY_EXPRESS ]   GALNT9 [ SEEK ]   GALNT9 [ MEM ]
Gene Expression Viewer (FireBrowse)GALNT9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)50614
GTEX Portal (Tissue expression)GALNT9
Human Protein AtlasENSG00000182870-GALNT9 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HCQ5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HCQ5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HCQ5
Splice isoforms : SwissVarQ9HCQ5
Catalytic activity : Enzyme2.4.1.41 [ Enzyme-Expasy ]   2.4.1.412.4.1.41 [ IntEnz-EBI ]   2.4.1.41 [ BRENDA ]   2.4.1.41 [ KEGG ]   
PhosPhoSitePlusQ9HCQ5
Domaine pattern : Prosite (Expaxy)RICIN_B_LECTIN (PS50231)   
Domains : Interpro (EBI)Glyco_trans_2-like    Nucleotide-diphossugar_trans    Ricin_B-like_lectins    Ricin_B_lectin    WW_dom   
Domain families : Pfam (Sanger)Glycos_transf_2 (PF00535)    Ricin_B_lectin (PF00652)   
Domain families : Pfam (NCBI)pfam00535    pfam00652   
Domain families : Smart (EMBL)RICIN (SM00458)  
Conserved Domain (NCBI)GALNT9
DMDM Disease mutations50614
Blocks (Seattle)GALNT9
SuperfamilyQ9HCQ5
Human Protein Atlas [tissue]ENSG00000182870-GALNT9 [tissue]
Peptide AtlasQ9HCQ5
IPIIPI00455275   IPI00455276   IPI00896546   IPI00887887   IPI01012749   IPI01011322   
Protein Interaction databases
DIP (DOE-UCLA)Q9HCQ5
IntAct (EBI)Q9HCQ5
FunCoupENSG00000182870
BioGRIDGALNT9
STRING (EMBL)GALNT9
ZODIACGALNT9
Ontologies - Pathways
QuickGOQ9HCQ5
Ontology : AmiGOGolgi membrane  polypeptide N-acetylgalactosaminyltransferase activity  Golgi apparatus  protein O-linked glycosylation  integral component of membrane  O-glycan processing  carbohydrate binding  metal ion binding  
Ontology : EGO-EBIGolgi membrane  polypeptide N-acetylgalactosaminyltransferase activity  Golgi apparatus  protein O-linked glycosylation  integral component of membrane  O-glycan processing  carbohydrate binding  metal ion binding  
Pathways : KEGGO-Glycan biosynthesis    Glycan structures - biosynthesis 1   
NDEx NetworkGALNT9
Atlas of Cancer Signalling NetworkGALNT9
Wikipedia pathwaysGALNT9
Orthology - Evolution
OrthoDB50614
GeneTree (enSembl)ENSG00000182870
Phylogenetic Trees/Animal Genes : TreeFamGALNT9
HOGENOMQ9HCQ5
Homologs : HomoloGeneGALNT9
Homology/Alignments : Family Browser (UCSC)GALNT9
Gene fusions - Rearrangements
Fusion PortalCCDC64 GALNT9
Fusion PortalTMEM132D GALNT9
Fusion PortalFBRSL1 GALNT9
Fusion : QuiverGALNT9
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGALNT9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GALNT9
dbVarGALNT9
ClinVarGALNT9
1000_GenomesGALNT9 
Exome Variant ServerGALNT9
ExAC (Exome Aggregation Consortium)ENSG00000182870
GNOMAD BrowserENSG00000182870
Varsome BrowserGALNT9
Genetic variants : HAPMAP50614
Genomic Variants (DGV)GALNT9 [DGVbeta]
DECIPHERGALNT9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGALNT9 
Mutations
ICGC Data PortalGALNT9 
TCGA Data PortalGALNT9 
Broad Tumor PortalGALNT9
OASIS PortalGALNT9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGALNT9  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DGALNT9
Mutations and Diseases : HGMDGALNT9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GALNT9
DgiDB (Drug Gene Interaction Database)GALNT9
DoCM (Curated mutations)GALNT9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GALNT9 (select a term)
intoGenGALNT9
Cancer3DGALNT9(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606251   
Orphanet
DisGeNETGALNT9
MedgenGALNT9
Genetic Testing Registry GALNT9
NextProtQ9HCQ5 [Medical]
TSGene50614
GENETestsGALNT9
Target ValidationGALNT9
Huge Navigator GALNT9 [HugePedia]
snp3D : Map Gene to Disease50614
BioCentury BCIQGALNT9
ClinGenGALNT9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD50614
Chemical/Pharm GKB GenePA28544
Clinical trialGALNT9
Miscellaneous
canSAR (ICR)GALNT9 (select the gene name)
DataMed IndexGALNT9
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGALNT9
EVEXGALNT9
GoPubMedGALNT9
iHOPGALNT9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 15:29:23 CEST 2019
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