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GALR2 (galanin receptor 2)

Identity

Other namesGALNR2
HGNC (Hugo) GALR2
LocusID (NCBI) 8811
Location 17q25.1
Location_base_pair Starts at 74070892 and ends at 74073573 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)GALR2   4133
Entrez_Gene (NCBI)GALR2  8811  galanin receptor 2
Cards
GeneCards (Weizmann)GALR2
Ensembl (Hinxton)ENSG00000182687 [Gene_View]  chr17:74070892-74073573 [Contig_View]  GALR2 [Vega]
AceView (NCBI)GALR2
Genatlas (Paris)GALR2
SOURCE (Stanford)NM_003857
Genomic and cartography
GoldenPath (UCSC)GALR2  -  17q25.1   chr17:74070892-74073573 +  17q25.1   [Description]    (hg19-Feb_2009)
EnsemblGALR2 - 17q25.1 [CytoView]
Mapping of homologs : NCBIGALR2 [Mapview]
OMIM603691   
Gene and transcription
Genbank (Entrez)AF040630 AF080586 BC069130 BC074914 BC074915
RefSeq transcript (SRS)NM_003857
RefSeq transcript (Entrez)NM_003857
RefSeq genomic (SRS)AC_000149 NC_000017 NC_018928 NT_010783 NW_001838454 NW_004078092
RefSeq genomic (Entrez)AC_000149 NC_000017 NC_018928 NT_010783 NW_001838454 NW_004078092
Consensus coding sequences : CCDS (NCBI)GALR2
Cluster EST : UnigeneHs.666366 [ SRS ] Hs.666366 [ NCBI ]
CGAP (NCI)Hs.666366
Alternative Splicing : Fast-db (Paris)GSHG0012831
Alternative Splicing GalleryENSG00000182687
Gene ExpressionGALR2 [ NCBI-GEO ]   GALR2 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43603 (SRS) O43603 (Uniprot)
NextProtO43603
With graphics : InterProO43603
Splice isoforms : SwissVarO43603(Swissvar)
Domaine pattern : Prosite (SRS)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (SRS)7TM_GPCR_Rhodpsn    Galanin_rcpt    Galnin_2_rcpt    GPCR_Rhodpsn_supfam   
Domains : Interpro (EBI)7TM_GPCR_Rhodpsn    Galanin_rcpt    Galnin_2_rcpt    GPCR_Rhodpsn_supfam   
Related proteins : CluSTrO43603
Domain families : Pfam (SRS)7tm_1 (PF00001)   
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
DMDM8811
Blocks (Seattle)O43603
Human Protein AtlasENSG00000182687
HPRD04735
IPIIPI00013353   
Protein Interaction databases
DIP (DOE-UCLA)O43603
IntAct (EBI)O43603
FunCoupENSG00000182687
REACTOMEGALR2
Protein Interaction Database8811
BioGRIDGALR2
InParanoidO43603
Interologous Interaction database O43603
IntegromeDBGALR2
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)GALR2
SNP (GeneSNP Utah)GALR2
SNP : HGBaseGALR2
Genetic variants : HAPMAPGALR2
Somatic Mutations in Cancer : COSMICGALR2 
CONAN: Copy Number AnalysisGALR2 
Mutations and Diseases : HGMDGALR2
OMIM603691   
GENETests603691   
Disease Genetic AssociationGALR2
Huge Navigator GALR2 [HugePedia]  GALR2 [HugeCancerGEM]
Genomic VariantsGALR2  GALR2 [DGVbeta]
snp3D : Map Gene to Disease8811
General knowledge
Homologs : HomoloGeneGALR2
Homology/Alignments : Family Browser (UCSC)GALR2
Phylogenetic Trees/Animal Genes : TreeFamGALR2
Chemical/Protein Interactions : CTD8811
Chemical/Pharm GKB GenePA28546
Clinical trialGALR2
Cancer Resource (Charite)ENSG00000182687
Ontology : AmiGOgalanin receptor activity  plasma membrane  muscle contraction  cell surface receptor signaling pathway  adenylate cyclase-modulating G-protein coupled receptor signaling pathway  adenylate cyclase-activating G-protein coupled receptor signaling pathway  elevation of cytosolic calcium ion concentration  synaptic transmission  multicellular organismal development  digestion  learning or memory  feeding behavior  integral to membrane  neuron projection development  neuropeptide binding  inositol phosphate metabolic process  phosphatidylinositol metabolic process  
Ontology : EGO-EBIgalanin receptor activity  plasma membrane  muscle contraction  cell surface receptor signaling pathway  adenylate cyclase-modulating G-protein coupled receptor signaling pathway  adenylate cyclase-activating G-protein coupled receptor signaling pathway  elevation of cytosolic calcium ion concentration  synaptic transmission  multicellular organismal development  digestion  learning or memory  feeding behavior  integral to membrane  neuron projection development  neuropeptide binding  inositol phosphate metabolic process  phosphatidylinositol metabolic process  
Pathways : KEGGNeuroactive ligand-receptor interaction
Other databases
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
PubGeneGALR2
iHOPGALR2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:47:35 CEST 2013
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