Atlas of Genetics and Cytogenetics in Oncology and Haematology

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GAPLINC (gastric adenocarcinoma associated, positive CD44 regulator, long intergenic non-coding RNA)

Identity

Alias_namesLINC01540
long intergenic non-protein coding RNA 1540
Alias_symbol (synonym)TCONS_00026238
lncRNA-uc002kmd.1
RP11-838N2.4
Other alias
HGNC (Hugo) GAPLINC
LocusID (NCBI) 100505592
Atlas_Id 55069
Location 18p11.31  [Link to chromosome band 18p11]
Location_base_pair Starts at 3466250 and ends at 3478978 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)GAPLINC   51308
Cards
Entrez_Gene (NCBI)GAPLINC  100505592  gastric adenocarcinoma associated, positive CD44 regulator, long intergenic non-coding RNA
AliasesLINC01540
GeneCards (Weizmann)GAPLINC
Ensembl hg19 (Hinxton)ENSG00000266835 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000266835 [Gene_View]  ENSG00000266835 [Sequence]  chr18:3466250-3478978 [Contig_View]  GAPLINC [Vega]
ICGC DataPortalENSG00000266835
TCGA cBioPortalGAPLINC
AceView (NCBI)GAPLINC
Genatlas (Paris)GAPLINC
WikiGenes100505592
SOURCE (Princeton)GAPLINC
Genetics Home Reference (NIH)GAPLINC
Genomic and cartography
GoldenPath hg38 (UCSC)GAPLINC  -     chr18:3466250-3478978 +  18p11.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GAPLINC  -     18p11.31   [Description]    (hg19-Feb_2009)
GoldenPathGAPLINC - 18p11.31 [CytoView hg19]  GAPLINC - 18p11.31 [CytoView hg38]
ImmunoBaseENSG00000266835
Mapping of homologs : NCBIGAPLINC [Mapview hg19]  GAPLINC [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ707365 BM782281 BX107736
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GAPLINC
Cluster EST : UnigeneHs.635114 [ NCBI ]
CGAP (NCI)Hs.635114
Alternative Splicing GalleryENSG00000266835
Gene ExpressionGAPLINC [ NCBI-GEO ]   GAPLINC [ EBI - ARRAY_EXPRESS ]   GAPLINC [ SEEK ]   GAPLINC [ MEM ]
Gene Expression Viewer (FireBrowse)GAPLINC [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100505592
GTEX Portal (Tissue expression)GAPLINC
Human Protein AtlasENSG00000266835-GAPLINC [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)GAPLINC
DMDM Disease mutations100505592
Blocks (Seattle)GAPLINC
Human Protein Atlas [tissue]ENSG00000266835-GAPLINC [tissue]
Protein Interaction databases
FunCoupENSG00000266835
BioGRIDGAPLINC
STRING (EMBL)GAPLINC
ZODIACGAPLINC
Ontologies - Pathways
Huge Navigator GAPLINC [HugePedia]
snp3D : Map Gene to Disease100505592
BioCentury BCIQGAPLINC
ClinGenGAPLINC
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100505592
Clinical trialGAPLINC
Miscellaneous
canSAR (ICR)GAPLINC (select the gene name)
DataMed IndexGAPLINC
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGAPLINC
EVEXGAPLINC
GoPubMedGAPLINC
iHOPGAPLINC
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Nov 13 17:44:27 CET 2019
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