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GATD3A (glutamine amidotransferase like class 1 domain containing 3A)

Identity

Alias (NCBI)C21orf33
ES1
GATD3
GT335
HES1
KNPH
KNPI
HGNC (Hugo) GATD3A
LocusID (NCBI) 8209
Atlas_Id 80283
Location 21q22.3  [Link to chromosome band 21q22]
Location_base_pair Starts at 44133612 and ends at 44145723 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)GATD3A   1273
Cards
Entrez_Gene (NCBI)GATD3A  8209  glutamine amidotransferase like class 1 domain containing 3A
AliasesC21orf33; ES1; GATD3; GT335; 
HES1; KNPH; KNPI
GeneCards (Weizmann)GATD3A
Ensembl hg19 (Hinxton)ENSG00000160221 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000160221 [Gene_View]  ENSG00000160221 [Sequence]  chr21:44133612-44145723 [Contig_View]  GATD3A [Vega]
ICGC DataPortalENSG00000160221
TCGA cBioPortalGATD3A
AceView (NCBI)GATD3A
Genatlas (Paris)GATD3A
WikiGenes8209
SOURCE (Princeton)GATD3A
Genetics Home Reference (NIH)GATD3A
Genomic and cartography
GoldenPath hg38 (UCSC)GATD3A  -     chr21:44133612-44145723 +  21q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GATD3A  -     21q22.3   [Description]    (hg19-Feb_2009)
GoldenPathGATD3A - 21q22.3 [CytoView hg19]  GATD3A - 21q22.3 [CytoView hg38]
ImmunoBaseENSG00000160221
genome Data Viewer NCBIGATD3A [Mapview hg19]  
OMIM601659   
Gene and transcription
Genbank (Entrez)AA045757 AW292582 BI196781 BP283346 BQ011869
RefSeq transcript (Entrez)NM_001320383 NM_001320384 NM_004649 NM_198155
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GATD3A
Alternative Splicing GalleryENSG00000160221
Gene ExpressionGATD3A [ NCBI-GEO ]   GATD3A [ EBI - ARRAY_EXPRESS ]   GATD3A [ SEEK ]   GATD3A [ MEM ]
Gene Expression Viewer (FireBrowse)GATD3A [ Firebrowse - Broad ]
GenevisibleExpression of GATD3A in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8209
GTEX Portal (Tissue expression)GATD3A
Human Protein AtlasENSG00000160221-GATD3A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0DPI2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0DPI2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0DPI2
Splice isoforms : SwissVarP0DPI2
PhosPhoSitePlusP0DPI2
Domains : Interpro (EBI)Class_I_gatase-like   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)GATD3A
DMDM Disease mutations8209
Blocks (Seattle)GATD3A
SuperfamilyP0DPI2
Human Protein Atlas [tissue]ENSG00000160221-GATD3A [tissue]
Peptide AtlasP0DPI2
IPIIPI00024913   IPI00218482   IPI00795385   IPI00794316   IPI00793677   IPI00798025   
Protein Interaction databases
DIP (DOE-UCLA)P0DPI2
IntAct (EBI)P0DPI2
FunCoupENSG00000160221
BioGRIDGATD3A
STRING (EMBL)GATD3A
ZODIACGATD3A
Ontologies - Pathways
QuickGOP0DPI2
Ontology : AmiGOmitochondrion  
Ontology : EGO-EBImitochondrion  
NDEx NetworkGATD3A
Atlas of Cancer Signalling NetworkGATD3A
Wikipedia pathwaysGATD3A
Orthology - Evolution
OrthoDB8209
GeneTree (enSembl)ENSG00000160221
Phylogenetic Trees/Animal Genes : TreeFamGATD3A
HOGENOMP0DPI2
Homologs : HomoloGeneGATD3A
Homology/Alignments : Family Browser (UCSC)GATD3A
Gene fusions - Rearrangements
Fusion : QuiverGATD3A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGATD3A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GATD3A
dbVarGATD3A
ClinVarGATD3A
1000_GenomesGATD3A 
Exome Variant ServerGATD3A
GNOMAD BrowserENSG00000160221
Varsome BrowserGATD3A
Genetic variants : HAPMAP8209
Genomic Variants (DGV)GATD3A [DGVbeta]
DECIPHERGATD3A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGATD3A 
Mutations
ICGC Data PortalGATD3A 
TCGA Data PortalGATD3A 
Broad Tumor PortalGATD3A
OASIS PortalGATD3A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGATD3A  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DGATD3A
Mutations and Diseases : HGMDGATD3A
BioMutasearch GATD3A
DgiDB (Drug Gene Interaction Database)GATD3A
DoCM (Curated mutations)GATD3A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GATD3A (select a term)
intoGenGATD3A
Cancer3DGATD3A(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601659   
Orphanet
DisGeNETGATD3A
MedgenGATD3A
Genetic Testing Registry GATD3A
NextProtP0DPI2 [Medical]
TSGene8209
GENETestsGATD3A
Target ValidationGATD3A
Huge Navigator GATD3A [HugePedia]
snp3D : Map Gene to Disease8209
BioCentury BCIQGATD3A
ClinGenGATD3A
Clinical trials, drugs, therapy
Protein Interactions : CTD8209
Pharm GKB GenePA25828
Clinical trialGATD3A
Miscellaneous
canSAR (ICR)GATD3A (select the gene name)
HarmonizomeGATD3A
DataMed IndexGATD3A
Probes
Litterature
PubMed36 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGATD3A
EVEXGATD3A
GoPubMedGATD3A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jul 16 15:56:43 CEST 2020

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