| Nomenclature |
|---|
| HGNC (Hugo) | GCM2 4198 |
| Cards |
|---|
| Entrez_Gene (NCBI) | GCM2 9247 glial cells missing transcription factor 2 |
| Aliases | GCMB; HRPT4; hGCMb |
| GeneCards (Weizmann) | GCM2 |
| Ensembl hg19 (Hinxton) | ENSG00000124827 [Gene_View] |
| Ensembl hg38 (Hinxton) | ENSG00000124827 [Gene_View] ENSG00000124827 [Sequence] chr6:10873223-10881865 [Contig_View] GCM2 [Vega] |
| ICGC DataPortal | ENSG00000124827 |
| TCGA cBioPortal | GCM2 |
| AceView (NCBI) | GCM2 |
| Genatlas (Paris) | GCM2 |
| WikiGenes | 9247 |
| SOURCE (Princeton) | GCM2 |
| Genetics Home Reference (NIH) | GCM2 |
| Genomic and cartography |
|---|
| GoldenPath hg38 (UCSC) | GCM2 - chr6:10873223-10881865 - 6p24.2 [Description] (hg38-Dec_2013) |
| GoldenPath hg19 (UCSC) | GCM2 - 6p24.2 [Description] (hg19-Feb_2009) |
| GoldenPath | GCM2 - 6p24.2 [CytoView hg19] GCM2 - 6p24.2 [CytoView hg38] |
| ImmunoBase | ENSG00000124827 |
| Mapping of homologs : NCBI | GCM2 [Mapview hg19] GCM2 [Mapview hg38] |
| OMIM | 146200 603716 617343 |
| Gene and transcription |
|---|
| Genbank (Entrez) | AF079550 AF091149 AI028145 BC069603 BC117316 |
| RefSeq transcript (Entrez) | NM_004752 |
| RefSeq genomic (Entrez) | |
| Consensus coding sequences : CCDS (NCBI) | GCM2 |
| Cluster EST : Unigene | Hs.227098 [ NCBI ] |
| CGAP (NCI) | Hs.227098 |
| Alternative Splicing Gallery | ENSG00000124827 |
| Gene Expression | GCM2 [ NCBI-GEO ] GCM2 [ EBI - ARRAY_EXPRESS ]
GCM2 [ SEEK ] GCM2 [ MEM ] |
| Gene Expression Viewer (FireBrowse) | GCM2 [ Firebrowse - Broad ] |
| SOURCE (Princeton) | Expression in : [Datasets] [Normal Tissue Atlas] [carcinoma Classsification] [NCI60] |
| Genevestigator | Expression in : [tissues] [cell-lines] [cancer] [perturbations] |
| BioGPS (Tissue expression) | 9247 |
| GTEX Portal (Tissue expression) | GCM2 |
| Human Protein Atlas | ENSG00000124827-GCM2 [pathology] [cell] [tissue] |
| Protein : pattern, domain, 3D structure |
|---|
| UniProt/SwissProt | O75603 [function] [subcellular_location] [family_and_domains] [pathology_and_biotech] [ptm_processing] [expression] [interaction] |
| NextProt | O75603 [Sequence] [Exons] [Medical] [Publications] |
| With graphics : InterPro | O75603 |
| Splice isoforms : SwissVar | O75603 |
| PhosPhoSitePlus | O75603 |
| Domaine pattern : Prosite (Expaxy) | GCM (PS50807) |
| Domains : Interpro (EBI) | GCM_dom_sf Tscrpt_reg_GCM |
| Domain families : Pfam (Sanger) | GCM (PF03615) |
| Domain families : Pfam (NCBI) | pfam03615 |
| Domain structure : Prodom (Prabi Lyon) | GCM_motif (PD014393) |
| Conserved Domain (NCBI) | GCM2 |
| DMDM Disease mutations | 9247 |
| Blocks (Seattle) | GCM2 |
| Superfamily | O75603 |
| Human Protein Atlas [tissue] | ENSG00000124827-GCM2 [tissue] |
| Peptide Atlas | O75603 |
| HPRD | 04758 |
| IPI | IPI00006249 |
| Protein Interaction databases |
|---|
| DIP (DOE-UCLA) | O75603 |
| IntAct (EBI) | O75603 |
| FunCoup | ENSG00000124827 |
| BioGRID | GCM2 |
| STRING (EMBL) | GCM2 |
| ZODIAC | GCM2 |
| Ontologies - Pathways |
|---|
| QuickGO | O75603 |
| Ontology : AmiGO | DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription activator activity, RNA polymerase II-specific DNA binding protein binding nucleus nucleus nucleus transcription by RNA polymerase II cellular calcium ion homeostasis multicellular organism development cellular phosphate ion homeostasis sequence-specific DNA binding sequence-specific DNA binding positive regulation of transcription by RNA polymerase II metal ion binding parathyroid gland development |
| Ontology : EGO-EBI | DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription activator activity, RNA polymerase II-specific DNA binding protein binding nucleus nucleus nucleus transcription by RNA polymerase II cellular calcium ion homeostasis multicellular organism development cellular phosphate ion homeostasis sequence-specific DNA binding sequence-specific DNA binding positive regulation of transcription by RNA polymerase II metal ion binding parathyroid gland development |
| NDEx Network | GCM2 |
| Atlas of Cancer Signalling Network | GCM2 |
| Wikipedia pathways | GCM2 |
| Orthology - Evolution |
|---|
| OrthoDB | 9247 |
| GeneTree (enSembl) | ENSG00000124827 |
| Phylogenetic Trees/Animal Genes : TreeFam | GCM2 |
| HOGENOM | O75603 |
| Homologs : HomoloGene | GCM2 |
| Homology/Alignments : Family Browser (UCSC) | GCM2 |
| Gene fusions - Rearrangements |
|---|
| Fusion : Quiver | GCM2 |
| Polymorphisms : SNP and Copy number variants |
|---|
| NCBI Variation Viewer | GCM2 [hg38] |
| dbSNP Single Nucleotide Polymorphism (NCBI) | GCM2 |
| dbVar | GCM2 |
| ClinVar | GCM2 |
| 1000_Genomes | GCM2 |
| Exome Variant Server | GCM2 |
| ExAC (Exome Aggregation Consortium) | ENSG00000124827 |
| GNOMAD Browser | ENSG00000124827 |
| Varsome Browser | GCM2 |
| Genetic variants : HAPMAP | 9247 |
| Genomic Variants (DGV) | GCM2 [DGVbeta] |
| DECIPHER | GCM2 [patients] [syndromes] [variants] [genes] |
| CONAN: Copy Number Analysis | GCM2 |
| Mutations |
|---|
| ICGC Data Portal | GCM2 |
| TCGA Data Portal | GCM2 |
| Broad Tumor Portal | GCM2 |
| OASIS Portal | GCM2 [ Somatic mutations - Copy number] |
| Somatic Mutations in Cancer : COSMIC | GCM2 [overview] [genome browser] [tissue] [distribution] |
| Somatic Mutations in Cancer : COSMIC3D | GCM2 |
| Mutations and Diseases : HGMD | GCM2 |
| LOVD (Leiden Open Variation Database) | Whole genome datasets |
| LOVD (Leiden Open Variation Database) | LOVD - Leiden Open Variation Database |
| LOVD (Leiden Open Variation Database) | LOVD 3.0 shared installation |
| BioMuta | search GCM2 |
| DgiDB (Drug Gene Interaction Database) | GCM2 |
| DoCM (Curated mutations) | GCM2 (select the gene name) |
| CIViC (Clinical Interpretations of Variants in Cancer) | GCM2 (select a term) |
| intoGen | GCM2 |
| Cancer3D | GCM2(select the gene name) |
| Impact of mutations | [PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser] |
| Diseases |
|---|
| OMIM | 146200 603716 617343 |
| Orphanet | 2112 |
| DisGeNET | GCM2 |
| Medgen | GCM2 |
| Genetic Testing Registry | GCM2
|
| NextProt | O75603 [Medical] |
| TSGene | 9247 |
| GENETests | GCM2 |
| Target Validation | GCM2 |
| Huge Navigator |
GCM2 [HugePedia] |
| snp3D : Map Gene to Disease | 9247 |
| BioCentury BCIQ | GCM2 |
| ClinGen | GCM2 |
| Clinical trials, drugs, therapy |
|---|
| Chemical/Protein Interactions : CTD | 9247 |
| Chemical/Pharm GKB Gene | PA28615 |
| Clinical trial | GCM2 |
| Miscellaneous |
|---|
| canSAR (ICR) | GCM2 (select the gene name) |
| DataMed Index | GCM2 |
| Probes |
|---|
| Litterature |
|---|
| PubMed | 37 Pubmed reference(s) in Entrez |
| GeneRIFs | Gene References Into Functions (Entrez) |
| CoreMine | GCM2 |
| EVEX | GCM2 |
| GoPubMed | GCM2 |
| iHOP | GCM2 |
