Atlas of Genetics and Cytogenetics in Oncology and Haematology

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GCNT1 (glucosaminyl (N-acetyl) transferase 1)

Identity

Alias_namesNACGT2
glucosaminyl (N-acetyl) transferase 1, core 2 (beta-1,6-N-acetylglucosaminyltransferase)
glucosaminyl (N-acetyl) transferase 1, core 2
Alias_symbol (synonym)C2GNT
NAGCT2
Other aliasC2GNT-L
C2GNT1
G6NT
HGNC (Hugo) GCNT1
LocusID (NCBI) 2650
Atlas_Id 43762
Location 9q21.13  [Link to chromosome band 9q21]
Location_base_pair Starts at 76459152 and ends at 76507416 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
KAT6B (10q22.2) / GCNT1 (9q21.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)GCNT1   4203
Cards
Entrez_Gene (NCBI)GCNT1  2650  glucosaminyl (N-acetyl) transferase 1
AliasesC2GNT; C2GNT-L; C2GNT1; G6NT; 
NACGT2; NAGCT2
GeneCards (Weizmann)GCNT1
Ensembl hg19 (Hinxton)ENSG00000187210 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187210 [Gene_View]  ENSG00000187210 [Sequence]  chr9:76459152-76507416 [Contig_View]  GCNT1 [Vega]
ICGC DataPortalENSG00000187210
TCGA cBioPortalGCNT1
AceView (NCBI)GCNT1
Genatlas (Paris)GCNT1
WikiGenes2650
SOURCE (Princeton)GCNT1
Genetics Home Reference (NIH)GCNT1
Genomic and cartography
GoldenPath hg38 (UCSC)GCNT1  -     chr9:76459152-76507416 +  9q21.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GCNT1  -     9q21.13   [Description]    (hg19-Feb_2009)
GoldenPathGCNT1 - 9q21.13 [CytoView hg19]  GCNT1 - 9q21.13 [CytoView hg38]
ImmunoBaseENSG00000187210
Mapping of homologs : NCBIGCNT1 [Mapview hg19]  GCNT1 [Mapview hg38]
OMIM600391   
Gene and transcription
Genbank (Entrez)AI445628 AJ420416 AK313343 AL832647 AY196293
RefSeq transcript (Entrez)NM_001097633 NM_001097634 NM_001097635 NM_001097636 NM_001490
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GCNT1
Cluster EST : UnigeneHs.521568 [ NCBI ]
CGAP (NCI)Hs.521568
Alternative Splicing GalleryENSG00000187210
Gene ExpressionGCNT1 [ NCBI-GEO ]   GCNT1 [ EBI - ARRAY_EXPRESS ]   GCNT1 [ SEEK ]   GCNT1 [ MEM ]
Gene Expression Viewer (FireBrowse)GCNT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2650
GTEX Portal (Tissue expression)GCNT1
Human Protein AtlasENSG00000187210-GCNT1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ02742   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ02742  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ02742
Splice isoforms : SwissVarQ02742
Catalytic activity : Enzyme2.4.1.102 [ Enzyme-Expasy ]   2.4.1.1022.4.1.102 [ IntEnz-EBI ]   2.4.1.102 [ BRENDA ]   2.4.1.102 [ KEGG ]   
PhosPhoSitePlusQ02742
Domains : Interpro (EBI)Glyco_trans_14   
Domain families : Pfam (Sanger)Branch (PF02485)   
Domain families : Pfam (NCBI)pfam02485   
Conserved Domain (NCBI)GCNT1
DMDM Disease mutations2650
Blocks (Seattle)GCNT1
SuperfamilyQ02742
Human Protein Atlas [tissue]ENSG00000187210-GCNT1 [tissue]
Peptide AtlasQ02742
HPRD02669
IPIIPI00295368   
Protein Interaction databases
DIP (DOE-UCLA)Q02742
IntAct (EBI)Q02742
FunCoupENSG00000187210
BioGRIDGCNT1
STRING (EMBL)GCNT1
ZODIACGCNT1
Ontologies - Pathways
QuickGOQ02742
Ontology : AmiGOGolgi membrane  beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase activity  protein binding  extracellular space  trans-Golgi network  glycoprotein biosynthetic process  integral component of membrane  O-glycan processing  Golgi cisterna  response to insulin  tissue morphogenesis  leukocyte tethering or rolling  cell adhesion molecule production  kidney morphogenesis  
Ontology : EGO-EBIGolgi membrane  beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase activity  protein binding  extracellular space  trans-Golgi network  glycoprotein biosynthetic process  integral component of membrane  O-glycan processing  Golgi cisterna  response to insulin  tissue morphogenesis  leukocyte tethering or rolling  cell adhesion molecule production  kidney morphogenesis  
Pathways : KEGGMucin type O-Glycan biosynthesis   
NDEx NetworkGCNT1
Atlas of Cancer Signalling NetworkGCNT1
Wikipedia pathwaysGCNT1
Orthology - Evolution
OrthoDB2650
GeneTree (enSembl)ENSG00000187210
Phylogenetic Trees/Animal Genes : TreeFamGCNT1
HOGENOMQ02742
Homologs : HomoloGeneGCNT1
Homology/Alignments : Family Browser (UCSC)GCNT1
Gene fusions - Rearrangements
Fusion : QuiverGCNT1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGCNT1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GCNT1
dbVarGCNT1
ClinVarGCNT1
1000_GenomesGCNT1 
Exome Variant ServerGCNT1
ExAC (Exome Aggregation Consortium)ENSG00000187210
GNOMAD BrowserENSG00000187210
Varsome BrowserGCNT1
Genetic variants : HAPMAP2650
Genomic Variants (DGV)GCNT1 [DGVbeta]
DECIPHERGCNT1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGCNT1 
Mutations
ICGC Data PortalGCNT1 
TCGA Data PortalGCNT1 
Broad Tumor PortalGCNT1
OASIS PortalGCNT1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGCNT1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DGCNT1
Mutations and Diseases : HGMDGCNT1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GCNT1
DgiDB (Drug Gene Interaction Database)GCNT1
DoCM (Curated mutations)GCNT1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GCNT1 (select a term)
intoGenGCNT1
Cancer3DGCNT1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600391   
Orphanet
DisGeNETGCNT1
MedgenGCNT1
Genetic Testing Registry GCNT1
NextProtQ02742 [Medical]
TSGene2650
GENETestsGCNT1
Target ValidationGCNT1
Huge Navigator GCNT1 [HugePedia]
snp3D : Map Gene to Disease2650
BioCentury BCIQGCNT1
ClinGenGCNT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2650
Chemical/Pharm GKB GenePA168
Clinical trialGCNT1
Miscellaneous
canSAR (ICR)GCNT1 (select the gene name)
DataMed IndexGCNT1
Probes
Litterature
PubMed41 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGCNT1
EVEXGCNT1
GoPubMedGCNT1
iHOPGCNT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Nov 13 17:44:37 CET 2019
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