Atlas of Genetics and Cytogenetics in Oncology and Haematology

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GCNT4 (glucosaminyl (N-acetyl) transferase 4)

Identity

Alias_namesglucosaminyl (N-acetyl) transferase 4, core 2 (beta-1,6-N-acetylglucosaminyltransferase)
Alias_symbol (synonym)C2GNT3
Other aliasLINC01336
HGNC (Hugo) GCNT4
LocusID (NCBI) 51301
Atlas_Id 63736
Location 5q13.3  [Link to chromosome band 5q13]
Location_base_pair Starts at 75027464 and ends at 75030899 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)GCNT4   17973
Cards
Entrez_Gene (NCBI)GCNT4  51301  glucosaminyl (N-acetyl) transferase 4
AliasesC2GNT3; LINC01336
GeneCards (Weizmann)GCNT4
Ensembl hg19 (Hinxton)ENSG00000176928 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176928 [Gene_View]  ENSG00000176928 [Sequence]  chr5:75027464-75030899 [Contig_View]  GCNT4 [Vega]
ICGC DataPortalENSG00000176928
TCGA cBioPortalGCNT4
AceView (NCBI)GCNT4
Genatlas (Paris)GCNT4
WikiGenes51301
SOURCE (Princeton)GCNT4
Genetics Home Reference (NIH)GCNT4
Genomic and cartography
GoldenPath hg38 (UCSC)GCNT4  -     chr5:75027464-75030899 -  5q13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GCNT4  -     5q13.3   [Description]    (hg19-Feb_2009)
GoldenPathGCNT4 - 5q13.3 [CytoView hg19]  GCNT4 - 5q13.3 [CytoView hg38]
ImmunoBaseENSG00000176928
Mapping of homologs : NCBIGCNT4 [Mapview hg19]  GCNT4 [Mapview hg38]
OMIM616782   
Gene and transcription
Genbank (Entrez)AF132035 BG900784 DB344036
RefSeq transcript (Entrez)NM_001366737 NM_016591
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GCNT4
Cluster EST : UnigeneHs.582288 [ NCBI ]
CGAP (NCI)Hs.582288
Alternative Splicing GalleryENSG00000176928
Gene ExpressionGCNT4 [ NCBI-GEO ]   GCNT4 [ EBI - ARRAY_EXPRESS ]   GCNT4 [ SEEK ]   GCNT4 [ MEM ]
Gene Expression Viewer (FireBrowse)GCNT4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51301
GTEX Portal (Tissue expression)GCNT4
Human Protein AtlasENSG00000176928-GCNT4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P109   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P109  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P109
Splice isoforms : SwissVarQ9P109
Catalytic activity : Enzyme2.4.1.102 [ Enzyme-Expasy ]   2.4.1.1022.4.1.102 [ IntEnz-EBI ]   2.4.1.102 [ BRENDA ]   2.4.1.102 [ KEGG ]   
PhosPhoSitePlusQ9P109
Domains : Interpro (EBI)Glyco_trans_14   
Domain families : Pfam (Sanger)Branch (PF02485)   
Domain families : Pfam (NCBI)pfam02485   
Conserved Domain (NCBI)GCNT4
DMDM Disease mutations51301
Blocks (Seattle)GCNT4
SuperfamilyQ9P109
Human Protein Atlas [tissue]ENSG00000176928-GCNT4 [tissue]
Peptide AtlasQ9P109
HPRD16651
IPIIPI00009879   
Protein Interaction databases
DIP (DOE-UCLA)Q9P109
IntAct (EBI)Q9P109
FunCoupENSG00000176928
BioGRIDGCNT4
STRING (EMBL)GCNT4
ZODIACGCNT4
Ontologies - Pathways
QuickGOQ9P109
Ontology : AmiGOGolgi membrane  inter-male aggressive behavior  beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase activity  carbohydrate metabolic process  protein O-linked glycosylation  N-acetyllactosaminide beta-1,6-N-acetylglucosaminyltransferase activity  integral component of membrane  O-glycan processing  thyroid hormone metabolic process  tissue morphogenesis  homeostasis of number of cells  kidney morphogenesis  
Ontology : EGO-EBIGolgi membrane  inter-male aggressive behavior  beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase activity  carbohydrate metabolic process  protein O-linked glycosylation  N-acetyllactosaminide beta-1,6-N-acetylglucosaminyltransferase activity  integral component of membrane  O-glycan processing  thyroid hormone metabolic process  tissue morphogenesis  homeostasis of number of cells  kidney morphogenesis  
NDEx NetworkGCNT4
Atlas of Cancer Signalling NetworkGCNT4
Wikipedia pathwaysGCNT4
Orthology - Evolution
OrthoDB51301
GeneTree (enSembl)ENSG00000176928
Phylogenetic Trees/Animal Genes : TreeFamGCNT4
HOGENOMQ9P109
Homologs : HomoloGeneGCNT4
Homology/Alignments : Family Browser (UCSC)GCNT4
Gene fusions - Rearrangements
Fusion : QuiverGCNT4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGCNT4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GCNT4
dbVarGCNT4
ClinVarGCNT4
1000_GenomesGCNT4 
Exome Variant ServerGCNT4
ExAC (Exome Aggregation Consortium)ENSG00000176928
GNOMAD BrowserENSG00000176928
Varsome BrowserGCNT4
Genetic variants : HAPMAP51301
Genomic Variants (DGV)GCNT4 [DGVbeta]
DECIPHERGCNT4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGCNT4 
Mutations
ICGC Data PortalGCNT4 
TCGA Data PortalGCNT4 
Broad Tumor PortalGCNT4
OASIS PortalGCNT4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGCNT4  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DGCNT4
Mutations and Diseases : HGMDGCNT4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GCNT4
DgiDB (Drug Gene Interaction Database)GCNT4
DoCM (Curated mutations)GCNT4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GCNT4 (select a term)
intoGenGCNT4
Cancer3DGCNT4(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616782   
Orphanet
DisGeNETGCNT4
MedgenGCNT4
Genetic Testing Registry GCNT4
NextProtQ9P109 [Medical]
TSGene51301
GENETestsGCNT4
Target ValidationGCNT4
Huge Navigator GCNT4 [HugePedia]
snp3D : Map Gene to Disease51301
BioCentury BCIQGCNT4
ClinGenGCNT4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51301
Chemical/Pharm GKB GenePA143485475
Clinical trialGCNT4
Miscellaneous
canSAR (ICR)GCNT4 (select the gene name)
DataMed IndexGCNT4
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGCNT4
EVEXGCNT4
GoPubMedGCNT4
iHOPGCNT4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 15:29:33 CEST 2019
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