| Nomenclature |
|---|
| HGNC (Hugo) | GCNT4 17973 |
| Cards |
|---|
| Entrez_Gene (NCBI) | GCNT4 51301 glucosaminyl (N-acetyl) transferase 4 |
| Aliases | C2GNT3; LINC01336 |
| GeneCards (Weizmann) | GCNT4 |
| Ensembl hg19 (Hinxton) | ENSG00000176928 [Gene_View] |
| Ensembl hg38 (Hinxton) | ENSG00000176928 [Gene_View] ENSG00000176928 [Sequence] chr5:75027464-75030899 [Contig_View] GCNT4 [Vega] |
| ICGC DataPortal | ENSG00000176928 |
| TCGA cBioPortal | GCNT4 |
| AceView (NCBI) | GCNT4 |
| Genatlas (Paris) | GCNT4 |
| WikiGenes | 51301 |
| SOURCE (Princeton) | GCNT4 |
| Genetics Home Reference (NIH) | GCNT4 |
| Genomic and cartography |
|---|
| GoldenPath hg38 (UCSC) | GCNT4 - chr5:75027464-75030899 - 5q13.3 [Description] (hg38-Dec_2013) |
| GoldenPath hg19 (UCSC) | GCNT4 - 5q13.3 [Description] (hg19-Feb_2009) |
| GoldenPath | GCNT4 - 5q13.3 [CytoView hg19] GCNT4 - 5q13.3 [CytoView hg38] |
| ImmunoBase | ENSG00000176928 |
| Mapping of homologs : NCBI | GCNT4 [Mapview hg19] GCNT4 [Mapview hg38] |
| OMIM | 616782 |
| Gene and transcription |
|---|
| Genbank (Entrez) | AF132035 BG900784 DB344036 |
| RefSeq transcript (Entrez) | NM_001366737 NM_016591 |
| RefSeq genomic (Entrez) | |
| Consensus coding sequences : CCDS (NCBI) | GCNT4 |
| Alternative Splicing Gallery | ENSG00000176928 |
| Gene Expression | GCNT4 [ NCBI-GEO ] GCNT4 [ EBI - ARRAY_EXPRESS ]
GCNT4 [ SEEK ] GCNT4 [ MEM ] |
| Gene Expression Viewer (FireBrowse) | GCNT4 [ Firebrowse - Broad ] |
| SOURCE (Princeton) | Expression in : [Datasets] [Normal Tissue Atlas] [carcinoma Classsification] [NCI60] |
| Genevestigator | Expression in : [tissues] [cell-lines] [cancer] [perturbations] |
| BioGPS (Tissue expression) | 51301 |
| GTEX Portal (Tissue expression) | GCNT4 |
| Human Protein Atlas | ENSG00000176928-GCNT4 [pathology] [cell] [tissue] |
| Protein : pattern, domain, 3D structure |
|---|
| UniProt/SwissProt | Q9P109 [function] [subcellular_location] [family_and_domains] [pathology_and_biotech] [ptm_processing] [expression] [interaction] |
| NextProt | Q9P109 [Sequence] [Exons] [Medical] [Publications] |
| With graphics : InterPro | Q9P109 |
| Splice isoforms : SwissVar | Q9P109 |
| PhosPhoSitePlus | Q9P109 |
| Domains : Interpro (EBI) | Glyco_trans_14 |
| Domain families : Pfam (Sanger) | Branch (PF02485) |
| Domain families : Pfam (NCBI) | pfam02485 |
| Conserved Domain (NCBI) | GCNT4 |
| DMDM Disease mutations | 51301 |
| Blocks (Seattle) | GCNT4 |
| Superfamily | Q9P109 |
| Human Protein Atlas [tissue] | ENSG00000176928-GCNT4 [tissue] |
| Peptide Atlas | Q9P109 |
| HPRD | 16651 |
| IPI | IPI00009879 |
| Protein Interaction databases |
|---|
| DIP (DOE-UCLA) | Q9P109 |
| IntAct (EBI) | Q9P109 |
| FunCoup | ENSG00000176928 |
| BioGRID | GCNT4 |
| STRING (EMBL) | GCNT4 |
| ZODIAC | GCNT4 |
| Ontologies - Pathways |
|---|
| QuickGO | Q9P109 |
| Ontology : AmiGO | Golgi membrane inter-male aggressive behavior beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase activity carbohydrate metabolic process protein O-linked glycosylation N-acetyllactosaminide beta-1,6-N-acetylglucosaminyltransferase activity integral component of membrane O-glycan processing thyroid hormone metabolic process tissue morphogenesis homeostasis of number of cells kidney morphogenesis |
| Ontology : EGO-EBI | Golgi membrane inter-male aggressive behavior beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase activity carbohydrate metabolic process protein O-linked glycosylation N-acetyllactosaminide beta-1,6-N-acetylglucosaminyltransferase activity integral component of membrane O-glycan processing thyroid hormone metabolic process tissue morphogenesis homeostasis of number of cells kidney morphogenesis |
| NDEx Network | GCNT4 |
| Atlas of Cancer Signalling Network | GCNT4 |
| Wikipedia pathways | GCNT4 |
| Orthology - Evolution |
|---|
| OrthoDB | 51301 |
| GeneTree (enSembl) | ENSG00000176928 |
| Phylogenetic Trees/Animal Genes : TreeFam | GCNT4 |
| HOGENOM | Q9P109 |
| Homologs : HomoloGene | GCNT4 |
| Homology/Alignments : Family Browser (UCSC) | GCNT4 |
| Gene fusions - Rearrangements |
|---|
| Fusion : Quiver | GCNT4 |
| Polymorphisms : SNP and Copy number variants |
|---|
| NCBI Variation Viewer | GCNT4 [hg38] |
| dbSNP Single Nucleotide Polymorphism (NCBI) | GCNT4 |
| dbVar | GCNT4 |
| ClinVar | GCNT4 |
| 1000_Genomes | GCNT4 |
| Exome Variant Server | GCNT4 |
| ExAC (Exome Aggregation Consortium) | ENSG00000176928 |
| GNOMAD Browser | ENSG00000176928 |
| Varsome Browser | GCNT4 |
| Genetic variants : HAPMAP | 51301 |
| Genomic Variants (DGV) | GCNT4 [DGVbeta] |
| DECIPHER | GCNT4 [patients] [syndromes] [variants] [genes] |
| CONAN: Copy Number Analysis | GCNT4 |
| Mutations |
|---|
| ICGC Data Portal | GCNT4 |
| TCGA Data Portal | GCNT4 |
| Broad Tumor Portal | GCNT4 |
| OASIS Portal | GCNT4 [ Somatic mutations - Copy number] |
| Somatic Mutations in Cancer : COSMIC | GCNT4 [overview] [genome browser] [tissue] [distribution] |
| Somatic Mutations in Cancer : COSMIC3D | GCNT4 |
| Mutations and Diseases : HGMD | GCNT4 |
| LOVD (Leiden Open Variation Database) | Whole genome datasets |
| LOVD (Leiden Open Variation Database) | LOVD - Leiden Open Variation Database |
| LOVD (Leiden Open Variation Database) | LOVD 3.0 shared installation |
| BioMuta | search GCNT4 |
| DgiDB (Drug Gene Interaction Database) | GCNT4 |
| DoCM (Curated mutations) | GCNT4 (select the gene name) |
| CIViC (Clinical Interpretations of Variants in Cancer) | GCNT4 (select a term) |
| intoGen | GCNT4 |
| Cancer3D | GCNT4(select the gene name) |
| Impact of mutations | [PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser] |
| Diseases |
|---|
| OMIM | 616782 |
| Orphanet | |
| DisGeNET | GCNT4 |
| Medgen | GCNT4 |
| Genetic Testing Registry | GCNT4
|
| NextProt | Q9P109 [Medical] |
| TSGene | 51301 |
| GENETests | GCNT4 |
| Target Validation | GCNT4 |
| Huge Navigator |
GCNT4 [HugePedia] |
| snp3D : Map Gene to Disease | 51301 |
| BioCentury BCIQ | GCNT4 |
| ClinGen | GCNT4 |
| Clinical trials, drugs, therapy |
|---|
| Protein Interactions : CTD | 51301 |
| Pharm GKB Gene | PA143485475 |
| Clinical trial | GCNT4 |
| Miscellaneous |
|---|
| canSAR (ICR) | GCNT4 (select the gene name) |
| Harmonizome | GCNT4 |
| DataMed Index | GCNT4 |
| Probes |
|---|
| Litterature |
|---|
| PubMed | 5 Pubmed reference(s) in Entrez |
| GeneRIFs | Gene References Into Functions (Entrez) |
| CoreMine | GCNT4 |
| EVEX | GCNT4 |
| GoPubMed | GCNT4 |
| iHOP | GCNT4 |
