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GHITM (growth hormone inducible transmembrane protein)

Identity

Other namesDERP2
HSPC282
MICS1
PTD010
TMBIM5
HGNC (Hugo) GHITM
LocusID (NCBI) 27069
Location 10q23.1
Location_base_pair Starts at 85899185 and ends at 85913311 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)GHITM   17281
Entrez_Gene (NCBI)GHITM  27069  growth hormone inducible transmembrane protein
Cards
GeneCards (Weizmann)GHITM
Ensembl (Hinxton)ENSG00000165678 [Gene_View]  chr10:85899185-85913311 [Contig_View]  GHITM [Vega]
AceView (NCBI)GHITM
Genatlas (Paris)GHITM
SOURCE (Stanford)NM_014394
Genomic and cartography
GoldenPath (UCSC)GHITM  -  10q23.1   chr10:85899185-85913311 +  10q23.1   [Description]    (hg19-Feb_2009)
EnsemblGHITM - 10q23.1 [CytoView]
Mapping of homologs : NCBIGHITM [Mapview]
Gene and transcription
Genbank (Entrez)AB009685 AF060923 AF078863 AF131820 AF161400
RefSeq transcript (SRS)NM_014394
RefSeq transcript (Entrez)NM_014394
RefSeq genomic (SRS)AC_000142 NC_000010 NC_018921 NT_030059 NW_001837991 NW_004078068
RefSeq genomic (Entrez)AC_000142 NC_000010 NC_018921 NT_030059 NW_001837991 NW_004078068
Consensus coding sequences : CCDS (NCBI)GHITM
Cluster EST : UnigeneHs.352656 [ SRS ] Hs.352656 [ NCBI ]
CGAP (NCI)Hs.352656
Alternative Splicing : Fast-db (Paris)GSHG0003511
Alternative Splicing GalleryENSG00000165678
Gene ExpressionGHITM [ NCBI-GEO ]   GHITM [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H3K2 (SRS) Q9H3K2 (Uniprot)
NextProtQ9H3K2
With graphics : InterProQ9H3K2
Splice isoforms : SwissVarQ9H3K2(Swissvar)
Domains : Interpro (SRS)Bax_inhibitor-1    Bax_inhibitor_1-related   
Domains : Interpro (EBI)Bax_inhibitor-1    Bax_inhibitor_1-related   
Related proteins : CluSTrQ9H3K2
Domain families : Pfam (SRS)Bax1-I (PF01027)    BaxI_1 (PF12811)   
Domain families : Pfam (Sanger)Bax1-I (PF01027)    BaxI_1 (PF12811)   
Domain families : Pfam (NCBI)pfam01027    pfam12811   
DMDM27069
Blocks (Seattle)Q9H3K2
Human Protein AtlasENSG00000165678
HPRD17038
IPIIPI00909387   IPI01010176   IPI00941155   IPI00549970   
Protein Interaction databases
DIP (DOE-UCLA)Q9H3K2
IntAct (EBI)Q9H3K2
FunCoupENSG00000165678
REACTOMEGHITM
Protein Interaction Database27069
BioGRIDGHITM
InParanoidQ9H3K2
Interologous Interaction database Q9H3K2
IntegromeDBGHITM
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)GHITM
SNP (GeneSNP Utah)GHITM
SNP : HGBaseGHITM
Genetic variants : HAPMAPGHITM
Somatic Mutations in Cancer : COSMICGHITM 
CONAN: Copy Number AnalysisGHITM 
Mutations and Diseases : HGMDGHITM
OMIM
GENETests
Disease Genetic AssociationGHITM
Huge Navigator GHITM [HugePedia]  GHITM [HugeCancerGEM]
Genomic VariantsGHITM  GHITM [DGVbeta]
ClinVarGHITM
snp3D : Map Gene to Disease27069
General knowledge
Homologs : HomoloGeneGHITM
Homology/Alignments : Family Browser (UCSC)GHITM
Phylogenetic Trees/Animal Genes : TreeFamGHITM
Chemical/Protein Interactions : CTD27069
Chemical/Pharm GKB GenePA28673
Clinical trialGHITM
Cancer Resource (Charite)ENSG00000165678
Ontology : AmiGOmolecular_function  protein binding  mitochondrial inner membrane  apoptotic process  biological_process  integral to membrane  
Ontology : EGO-EBImolecular_function  protein binding  mitochondrial inner membrane  apoptotic process  biological_process  integral to membrane  
Other databases
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
PubGeneGHITM
iHOPGHITM
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jun 14 17:49:28 CEST 2013
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