Atlas of Genetics and Cytogenetics in Oncology and Haematology

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GLIPR1 (GLI pathogenesis related 1)

Identity

Alias_namesGLI pathogenesis-related 1 (glioma)
Alias_symbol (synonym)RTVP1
GliPR
Other aliasCRISP7
GLIPR
HGNC (Hugo) GLIPR1
LocusID (NCBI) 11010
Atlas_Id 40721
Location 12q21.2  [Link to chromosome band 12q21]
Location_base_pair Starts at 75480733 and ends at 75501936 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(3;12)(q12;q21) GLIPR1/TRMT10C

External links

Nomenclature
HGNC (Hugo)GLIPR1   17001
Cards
Entrez_Gene (NCBI)GLIPR1  11010  GLI pathogenesis related 1
AliasesCRISP7; GLIPR; RTVP1
GeneCards (Weizmann)GLIPR1
Ensembl hg19 (Hinxton)ENSG00000139278 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000139278 [Gene_View]  ENSG00000139278 [Sequence]  chr12:75480733-75501936 [Contig_View]  GLIPR1 [Vega]
ICGC DataPortalENSG00000139278
TCGA cBioPortalGLIPR1
AceView (NCBI)GLIPR1
Genatlas (Paris)GLIPR1
WikiGenes11010
SOURCE (Princeton)GLIPR1
Genetics Home Reference (NIH)GLIPR1
Genomic and cartography
GoldenPath hg38 (UCSC)GLIPR1  -     chr12:75480733-75501936 +  12q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GLIPR1  -     12q21.2   [Description]    (hg19-Feb_2009)
GoldenPathGLIPR1 - 12q21.2 [CytoView hg19]  GLIPR1 - 12q21.2 [CytoView hg38]
ImmunoBaseENSG00000139278
Mapping of homologs : NCBIGLIPR1 [Mapview hg19]  GLIPR1 [Mapview hg38]
OMIM602692   
Gene and transcription
Genbank (Entrez)AF400440 AK304847 AK313449 BC005227 BC012510
RefSeq transcript (Entrez)NM_006851
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GLIPR1
Cluster EST : UnigeneHs.205558 [ NCBI ]
CGAP (NCI)Hs.205558
Alternative Splicing GalleryENSG00000139278
Gene ExpressionGLIPR1 [ NCBI-GEO ]   GLIPR1 [ EBI - ARRAY_EXPRESS ]   GLIPR1 [ SEEK ]   GLIPR1 [ MEM ]
Gene Expression Viewer (FireBrowse)GLIPR1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11010
GTEX Portal (Tissue expression)GLIPR1
Human Protein AtlasENSG00000139278-GLIPR1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP48060   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP48060  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP48060
Splice isoforms : SwissVarP48060
PhosPhoSitePlusP48060
Domaine pattern : Prosite (Expaxy)CRISP_1 (PS01009)    CRISP_2 (PS01010)   
Domains : Interpro (EBI)Allrgn_V5/Tpx1    Allrgn_V5/Tpx1_CS    CAP_domain    CAP_sf    SCP_GLIPR-1-like    V5_allergen   
Domain families : Pfam (Sanger)CAP (PF00188)   
Domain families : Pfam (NCBI)pfam00188   
Domain families : Smart (EMBL)SCP (SM00198)  
Conserved Domain (NCBI)GLIPR1
DMDM Disease mutations11010
Blocks (Seattle)GLIPR1
PDB (RSDB)3Q2R    3Q2U   
PDB Europe3Q2R    3Q2U   
PDB (PDBSum)3Q2R    3Q2U   
PDB (IMB)3Q2R    3Q2U   
Structural Biology KnowledgeBase3Q2R    3Q2U   
SCOP (Structural Classification of Proteins)3Q2R    3Q2U   
CATH (Classification of proteins structures)3Q2R    3Q2U   
SuperfamilyP48060
Human Protein Atlas [tissue]ENSG00000139278-GLIPR1 [tissue]
Peptide AtlasP48060
HPRD04071
IPIIPI00296936   IPI01015543   IPI00868942   IPI01020984   
Protein Interaction databases
DIP (DOE-UCLA)P48060
IntAct (EBI)P48060
FunCoupENSG00000139278
BioGRIDGLIPR1
STRING (EMBL)GLIPR1
ZODIACGLIPR1
Ontologies - Pathways
QuickGOP48060
Ontology : AmiGOextracellular space  plasma membrane  membrane  integral component of membrane  regulation of lipid metabolic process  azurophil granule membrane  neutrophil degranulation  
Ontology : EGO-EBIextracellular space  plasma membrane  membrane  integral component of membrane  regulation of lipid metabolic process  azurophil granule membrane  neutrophil degranulation  
NDEx NetworkGLIPR1
Atlas of Cancer Signalling NetworkGLIPR1
Wikipedia pathwaysGLIPR1
Orthology - Evolution
OrthoDB11010
GeneTree (enSembl)ENSG00000139278
Phylogenetic Trees/Animal Genes : TreeFamGLIPR1
HOGENOMP48060
Homologs : HomoloGeneGLIPR1
Homology/Alignments : Family Browser (UCSC)GLIPR1
Gene fusions - Rearrangements
Fusion : QuiverGLIPR1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGLIPR1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GLIPR1
dbVarGLIPR1
ClinVarGLIPR1
1000_GenomesGLIPR1 
Exome Variant ServerGLIPR1
ExAC (Exome Aggregation Consortium)ENSG00000139278
GNOMAD BrowserENSG00000139278
Varsome BrowserGLIPR1
Genetic variants : HAPMAP11010
Genomic Variants (DGV)GLIPR1 [DGVbeta]
DECIPHERGLIPR1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGLIPR1 
Mutations
ICGC Data PortalGLIPR1 
TCGA Data PortalGLIPR1 
Broad Tumor PortalGLIPR1
OASIS PortalGLIPR1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGLIPR1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DGLIPR1
Mutations and Diseases : HGMDGLIPR1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GLIPR1
DgiDB (Drug Gene Interaction Database)GLIPR1
DoCM (Curated mutations)GLIPR1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GLIPR1 (select a term)
intoGenGLIPR1
Cancer3DGLIPR1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602692   
Orphanet
DisGeNETGLIPR1
MedgenGLIPR1
Genetic Testing Registry GLIPR1
NextProtP48060 [Medical]
TSGene11010
GENETestsGLIPR1
Target ValidationGLIPR1
Huge Navigator GLIPR1 [HugePedia]
snp3D : Map Gene to Disease11010
BioCentury BCIQGLIPR1
ClinGenGLIPR1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11010
Chemical/Pharm GKB GenePA134988403
Clinical trialGLIPR1
Miscellaneous
canSAR (ICR)GLIPR1 (select the gene name)
DataMed IndexGLIPR1
Probes
Litterature
PubMed38 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGLIPR1
EVEXGLIPR1
GoPubMedGLIPR1
iHOPGLIPR1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Nov 13 17:44:59 CET 2019
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