Atlas of Genetics and Cytogenetics in Oncology and Haematology

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GLYATL2 (glycine-N-acyltransferase like 2)

Identity

Alias_namesglycine-N-acyltransferase-like 2
Alias_symbol (synonym)BXMAS2-10
MGC24009
Other aliasGATF-B
HGNC (Hugo) GLYATL2
LocusID (NCBI) 219970
Atlas_Id 63840
Location 11q12.1  [Link to chromosome band 11q12]
Location_base_pair Starts at 58834066 and ends at 58844524 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
GLYATL2 (11q12.1) / GLYATL2 (11q12.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)GLYATL2   24178
Cards
Entrez_Gene (NCBI)GLYATL2  219970  glycine-N-acyltransferase like 2
AliasesBXMAS2-10; GATF-B
GeneCards (Weizmann)GLYATL2
Ensembl hg19 (Hinxton)ENSG00000156689 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000156689 [Gene_View]  ENSG00000156689 [Sequence]  chr11:58834066-58844524 [Contig_View]  GLYATL2 [Vega]
ICGC DataPortalENSG00000156689
TCGA cBioPortalGLYATL2
AceView (NCBI)GLYATL2
Genatlas (Paris)GLYATL2
WikiGenes219970
SOURCE (Princeton)GLYATL2
Genetics Home Reference (NIH)GLYATL2
Genomic and cartography
GoldenPath hg38 (UCSC)GLYATL2  -     chr11:58834066-58844524 -  11q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GLYATL2  -     11q12.1   [Description]    (hg19-Feb_2009)
GoldenPathGLYATL2 - 11q12.1 [CytoView hg19]  GLYATL2 - 11q12.1 [CytoView hg38]
ImmunoBaseENSG00000156689
Mapping of homologs : NCBIGLYATL2 [Mapview hg19]  GLYATL2 [Mapview hg38]
OMIM614762   
Gene and transcription
Genbank (Entrez)AB207211 AF426250 AW264415 BC016789 BC021682
RefSeq transcript (Entrez)NM_145016
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GLYATL2
Cluster EST : UnigeneHs.254271 [ NCBI ]
CGAP (NCI)Hs.254271
Alternative Splicing GalleryENSG00000156689
Gene ExpressionGLYATL2 [ NCBI-GEO ]   GLYATL2 [ EBI - ARRAY_EXPRESS ]   GLYATL2 [ SEEK ]   GLYATL2 [ MEM ]
Gene Expression Viewer (FireBrowse)GLYATL2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)219970
GTEX Portal (Tissue expression)GLYATL2
Human Protein AtlasENSG00000156689-GLYATL2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WU03   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WU03  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WU03
Splice isoforms : SwissVarQ8WU03
Catalytic activity : Enzyme2.3.1.13 [ Enzyme-Expasy ]   2.3.1.132.3.1.13 [ IntEnz-EBI ]   2.3.1.13 [ BRENDA ]   2.3.1.13 [ KEGG ]   
PhosPhoSitePlusQ8WU03
Domains : Interpro (EBI)Acyl_CoA_acyltransferase    Glycine_N-acyltransferase    Glycine_N-acyltransferase_C    Glycine_N-acyltransferase_N   
Domain families : Pfam (Sanger)Gly_acyl_tr_C (PF08444)    Gly_acyl_tr_N (PF06021)   
Domain families : Pfam (NCBI)pfam08444    pfam06021   
Conserved Domain (NCBI)GLYATL2
DMDM Disease mutations219970
Blocks (Seattle)GLYATL2
SuperfamilyQ8WU03
Human Protein Atlas [tissue]ENSG00000156689-GLYATL2 [tissue]
Peptide AtlasQ8WU03
HPRD16568
IPIIPI00102799   
Protein Interaction databases
DIP (DOE-UCLA)Q8WU03
IntAct (EBI)Q8WU03
FunCoupENSG00000156689
BioGRIDGLYATL2
STRING (EMBL)GLYATL2
ZODIACGLYATL2
Ontologies - Pathways
QuickGOQ8WU03
Ontology : AmiGOmitochondrion  endoplasmic reticulum  long-chain fatty acid catabolic process  glycine N-acyltransferase activity  medium-chain fatty acid catabolic process  monounsaturated fatty acid catabolic process  
Ontology : EGO-EBImitochondrion  endoplasmic reticulum  long-chain fatty acid catabolic process  glycine N-acyltransferase activity  medium-chain fatty acid catabolic process  monounsaturated fatty acid catabolic process  
NDEx NetworkGLYATL2
Atlas of Cancer Signalling NetworkGLYATL2
Wikipedia pathwaysGLYATL2
Orthology - Evolution
OrthoDB219970
GeneTree (enSembl)ENSG00000156689
Phylogenetic Trees/Animal Genes : TreeFamGLYATL2
HOGENOMQ8WU03
Homologs : HomoloGeneGLYATL2
Homology/Alignments : Family Browser (UCSC)GLYATL2
Gene fusions - Rearrangements
Fusion : QuiverGLYATL2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGLYATL2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GLYATL2
dbVarGLYATL2
ClinVarGLYATL2
1000_GenomesGLYATL2 
Exome Variant ServerGLYATL2
ExAC (Exome Aggregation Consortium)ENSG00000156689
GNOMAD BrowserENSG00000156689
Varsome BrowserGLYATL2
Genetic variants : HAPMAP219970
Genomic Variants (DGV)GLYATL2 [DGVbeta]
DECIPHERGLYATL2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGLYATL2 
Mutations
ICGC Data PortalGLYATL2 
TCGA Data PortalGLYATL2 
Broad Tumor PortalGLYATL2
OASIS PortalGLYATL2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGLYATL2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DGLYATL2
Mutations and Diseases : HGMDGLYATL2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GLYATL2
DgiDB (Drug Gene Interaction Database)GLYATL2
DoCM (Curated mutations)GLYATL2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GLYATL2 (select a term)
intoGenGLYATL2
Cancer3DGLYATL2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614762   
Orphanet
DisGeNETGLYATL2
MedgenGLYATL2
Genetic Testing Registry GLYATL2
NextProtQ8WU03 [Medical]
TSGene219970
GENETestsGLYATL2
Target ValidationGLYATL2
Huge Navigator GLYATL2 [HugePedia]
snp3D : Map Gene to Disease219970
BioCentury BCIQGLYATL2
ClinGenGLYATL2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD219970
Chemical/Pharm GKB GenePA142671728
Clinical trialGLYATL2
Miscellaneous
canSAR (ICR)GLYATL2 (select the gene name)
DataMed IndexGLYATL2
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGLYATL2
EVEXGLYATL2
GoPubMedGLYATL2
iHOPGLYATL2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 15:29:50 CEST 2019
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