Atlas of Genetics and Cytogenetics in Oncology and Haematology

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GOLGA6D (golgin A6 family member D)

Identity

Alias_namesgolgi autoantigen, golgin subfamily a, 6D
golgin A6 family, member D
Other alias-
HGNC (Hugo) GOLGA6D
LocusID (NCBI) 653643
Atlas_Id 54025
Location 15q24.2  [Link to chromosome band 15q24]
Location_base_pair Starts at 75282841 and ends at 75295807 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)GOLGA6D   32204
Cards
Entrez_Gene (NCBI)GOLGA6D  653643  golgin A6 family member D
Aliases
GeneCards (Weizmann)GOLGA6D
Ensembl hg19 (Hinxton)ENSG00000140478 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000140478 [Gene_View]  ENSG00000140478 [Sequence]  chr15:75282841-75295807 [Contig_View]  GOLGA6D [Vega]
ICGC DataPortalENSG00000140478
TCGA cBioPortalGOLGA6D
AceView (NCBI)GOLGA6D
Genatlas (Paris)GOLGA6D
WikiGenes653643
SOURCE (Princeton)GOLGA6D
Genetics Home Reference (NIH)GOLGA6D
Genomic and cartography
GoldenPath hg38 (UCSC)GOLGA6D  -     chr15:75282841-75295807 +  15q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GOLGA6D  -     15q24.2   [Description]    (hg19-Feb_2009)
GoldenPathGOLGA6D - 15q24.2 [CytoView hg19]  GOLGA6D - 15q24.2 [CytoView hg38]
ImmunoBaseENSG00000140478
Mapping of homologs : NCBIGOLGA6D [Mapview hg19]  GOLGA6D [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001145224
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GOLGA6D
Cluster EST : UnigeneHs.672474 [ NCBI ]
CGAP (NCI)Hs.672474
Alternative Splicing GalleryENSG00000140478
Gene ExpressionGOLGA6D [ NCBI-GEO ]   GOLGA6D [ EBI - ARRAY_EXPRESS ]   GOLGA6D [ SEEK ]   GOLGA6D [ MEM ]
Gene Expression Viewer (FireBrowse)GOLGA6D [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)653643
GTEX Portal (Tissue expression)GOLGA6D
Human Protein AtlasENSG00000140478-GOLGA6D [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0CG33   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0CG33  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0CG33
Splice isoforms : SwissVarP0CG33
PhosPhoSitePlusP0CG33
Domains : Interpro (EBI)Golgin_A   
Domain families : Pfam (Sanger)GOLGA2L5 (PF15070)   
Domain families : Pfam (NCBI)pfam15070   
Conserved Domain (NCBI)GOLGA6D
DMDM Disease mutations653643
Blocks (Seattle)GOLGA6D
SuperfamilyP0CG33
Human Protein Atlas [tissue]ENSG00000140478-GOLGA6D [tissue]
Peptide AtlasP0CG33
IPIIPI00399085   
Protein Interaction databases
DIP (DOE-UCLA)P0CG33
IntAct (EBI)P0CG33
FunCoupENSG00000140478
BioGRIDGOLGA6D
STRING (EMBL)GOLGA6D
ZODIACGOLGA6D
Ontologies - Pathways
QuickGOP0CG33
Ontology : AmiGOGolgi cis cisterna  Golgi apparatus  cis-Golgi network  Golgi organization  Golgi cisterna membrane  spindle assembly  
Ontology : EGO-EBIGolgi cis cisterna  Golgi apparatus  cis-Golgi network  Golgi organization  Golgi cisterna membrane  spindle assembly  
NDEx NetworkGOLGA6D
Atlas of Cancer Signalling NetworkGOLGA6D
Wikipedia pathwaysGOLGA6D
Orthology - Evolution
OrthoDB653643
GeneTree (enSembl)ENSG00000140478
Phylogenetic Trees/Animal Genes : TreeFamGOLGA6D
HOGENOMP0CG33
Homologs : HomoloGeneGOLGA6D
Homology/Alignments : Family Browser (UCSC)GOLGA6D
Gene fusions - Rearrangements
Fusion : QuiverGOLGA6D
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGOLGA6D [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GOLGA6D
dbVarGOLGA6D
ClinVarGOLGA6D
1000_GenomesGOLGA6D 
Exome Variant ServerGOLGA6D
ExAC (Exome Aggregation Consortium)ENSG00000140478
GNOMAD BrowserENSG00000140478
Varsome BrowserGOLGA6D
Genetic variants : HAPMAP653643
Genomic Variants (DGV)GOLGA6D [DGVbeta]
DECIPHERGOLGA6D [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGOLGA6D 
Mutations
ICGC Data PortalGOLGA6D 
TCGA Data PortalGOLGA6D 
Broad Tumor PortalGOLGA6D
OASIS PortalGOLGA6D [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGOLGA6D  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DGOLGA6D
Mutations and Diseases : HGMDGOLGA6D
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GOLGA6D
DgiDB (Drug Gene Interaction Database)GOLGA6D
DoCM (Curated mutations)GOLGA6D (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GOLGA6D (select a term)
intoGenGOLGA6D
Cancer3DGOLGA6D(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETGOLGA6D
MedgenGOLGA6D
Genetic Testing Registry GOLGA6D
NextProtP0CG33 [Medical]
TSGene653643
GENETestsGOLGA6D
Target ValidationGOLGA6D
Huge Navigator GOLGA6D [HugePedia]
snp3D : Map Gene to Disease653643
BioCentury BCIQGOLGA6D
ClinGenGOLGA6D
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD653643
Chemical/Pharm GKB GenePA162389960
Clinical trialGOLGA6D
Miscellaneous
canSAR (ICR)GOLGA6D (select the gene name)
DataMed IndexGOLGA6D
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGOLGA6D
EVEXGOLGA6D
GoPubMedGOLGA6D
iHOPGOLGA6D
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Nov 13 17:45:18 CET 2019
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