Atlas of Genetics and Cytogenetics in Oncology and Haematology


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GOLIM4 (golgi integral membrane protein 4)

Identity

Alias_namesGOLPH4
golgi phosphoprotein 4
Alias_symbol (synonym)GPP130
GIMPC
P138
Other alias
HGNC (Hugo) GOLIM4
LocusID (NCBI) 27333
Atlas_Id 57968
Location 3q26.2  [Link to chromosome band 3q26]
Location_base_pair Starts at 168008673 and ends at 168095925 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
GOLIM4 (3q26.2) / BHMT (5q14.1)GOLIM4 (3q26.2) / NCEH1 (3q26.31)GOLIM4 (3q26.2) / PMPCB (7q22.1)
GOLIM4 (3q26.2) / SLC40A1 (2q32.2)LPP (3q28) / GOLIM4 (3q26.2)OSR2 (8q22.2) / GOLIM4 (3q26.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 3 ]
  t(2;3)(q32;q26) GOLIM4/SLC40A1
GOLIM4/NCEH1 (3q26)
t(3;3)(q26;q28) LPP/GOLIM4


External links

Nomenclature
HGNC (Hugo)GOLIM4   15448
Cards
Entrez_Gene (NCBI)GOLIM4  27333  golgi integral membrane protein 4
AliasesGIMPC; GOLPH4; GPP130; P138
GeneCards (Weizmann)GOLIM4
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr3:168008673-168095925 [Contig_View]  GOLIM4 [Vega]
TCGA cBioPortalGOLIM4
AceView (NCBI)GOLIM4
Genatlas (Paris)GOLIM4
WikiGenes27333
SOURCE (Princeton)GOLIM4
Genetics Home Reference (NIH)GOLIM4
Genomic and cartography
GoldenPath hg38 (UCSC)GOLIM4  -     chr3:168008673-168095925 -  3q26.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GOLIM4  -     3q26.2   [Description]    (hg19-Feb_2009)
GoldenPathGOLIM4 - 3q26.2 [CytoView hg19]  GOLIM4 - 3q26.2 [CytoView hg38]
Mapping of homologs : NCBIGOLIM4 [Mapview hg19]  GOLIM4 [Mapview hg38]
OMIM606805   
Gene and transcription
Genbank (Entrez)AK307557 AK307718 AU310391 BC143232 BC143233
RefSeq transcript (Entrez)NM_001308155 NM_014498
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GOLIM4
Cluster EST : UnigeneHs.592880 [ NCBI ]
CGAP (NCI)Hs.592880
Gene ExpressionGOLIM4 [ NCBI-GEO ]   GOLIM4 [ EBI - ARRAY_EXPRESS ]   GOLIM4 [ SEEK ]   GOLIM4 [ MEM ]
Gene Expression Viewer (FireBrowse)GOLIM4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27333
GTEX Portal (Tissue expression)GOLIM4
Protein : pattern, domain, 3D structure
UniProt/SwissProtO00461   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO00461  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO00461
Splice isoforms : SwissVarO00461
PhosPhoSitePlusO00461
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)GOLIM4
DMDM Disease mutations27333
Blocks (Seattle)GOLIM4
SuperfamilyO00461
Peptide AtlasO00461
IPIIPI00004962   IPI00945220   
Protein Interaction databases
DIP (DOE-UCLA)O00461
IntAct (EBI)O00461
BioGRIDGOLIM4
STRING (EMBL)GOLIM4
ZODIACGOLIM4
Ontologies - Pathways
QuickGOO00461
Ontology : AmiGOGolgi membrane  Golgi apparatus  Golgi lumen  cis-Golgi network  endosome membrane  membrane  integral component of membrane  transport vesicle  endocytic vesicle  Golgi cisterna membrane  
Ontology : EGO-EBIGolgi membrane  Golgi apparatus  Golgi lumen  cis-Golgi network  endosome membrane  membrane  integral component of membrane  transport vesicle  endocytic vesicle  Golgi cisterna membrane  
NDEx NetworkGOLIM4
Atlas of Cancer Signalling NetworkGOLIM4
Wikipedia pathwaysGOLIM4
Orthology - Evolution
OrthoDB27333
Phylogenetic Trees/Animal Genes : TreeFamGOLIM4
HOGENOMO00461
Homologs : HomoloGeneGOLIM4
Homology/Alignments : Family Browser (UCSC)GOLIM4
Gene fusions - Rearrangements
Fusion : QuiverGOLIM4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGOLIM4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GOLIM4
dbVarGOLIM4
ClinVarGOLIM4
1000_GenomesGOLIM4 
Exome Variant ServerGOLIM4
Varsome BrowserGOLIM4
Genetic variants : HAPMAP27333
Genomic Variants (DGV)GOLIM4 [DGVbeta]
DECIPHERGOLIM4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGOLIM4 
Mutations
ICGC Data PortalGOLIM4 
TCGA Data PortalGOLIM4 
Broad Tumor PortalGOLIM4
OASIS PortalGOLIM4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGOLIM4  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DGOLIM4
Mutations and Diseases : HGMDGOLIM4
BioMutasearch GOLIM4
DgiDB (Drug Gene Interaction Database)GOLIM4
DoCM (Curated mutations)GOLIM4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GOLIM4 (select a term)
intoGenGOLIM4
Cancer3DGOLIM4(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606805   
Orphanet
DisGeNETGOLIM4
MedgenGOLIM4
Genetic Testing Registry GOLIM4
NextProtO00461 [Medical]
TSGene27333
GENETestsGOLIM4
Target ValidationGOLIM4
Huge Navigator GOLIM4 [HugePedia]
snp3D : Map Gene to Disease27333
BioCentury BCIQGOLIM4
ClinGenGOLIM4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD27333
Chemical/Pharm GKB GenePA162390001
Clinical trialGOLIM4
Miscellaneous
canSAR (ICR)GOLIM4 (select the gene name)
DataMed IndexGOLIM4
Probes
Litterature
PubMed33 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGOLIM4
EVEXGOLIM4
GoPubMedGOLIM4
iHOPGOLIM4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Nov 13 17:45:19 CET 2019

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