Atlas of Genetics and Cytogenetics in Oncology and Haematology

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GORAB (golgin, RAB6 interacting)

Identity

Alias_namesSCYL1BP1
SCY1-like 1 binding protein 1
golgin, RAB6-interacting
Alias_symbol (synonym)FLJ11752
NTKL-BP1
GO
Other aliasNTKLBP1
HGNC (Hugo) GORAB
LocusID (NCBI) 92344
Atlas_Id 51778
Location 1q24.2  [Link to chromosome band 1q24]
Location_base_pair Starts at 170532122 and ends at 170553833 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
DCAF16 (4p15.31) / GORAB (1q24.2)GORAB (1q24.2) / DST (6p12.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)GORAB   25676
Cards
Entrez_Gene (NCBI)GORAB  92344  golgin, RAB6 interacting
AliasesGO; NTKLBP1; SCYL1BP1
GeneCards (Weizmann)GORAB
Ensembl hg19 (Hinxton)ENSG00000120370 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000120370 [Gene_View]  ENSG00000120370 [Sequence]  chr1:170532122-170553833 [Contig_View]  GORAB [Vega]
ICGC DataPortalENSG00000120370
TCGA cBioPortalGORAB
AceView (NCBI)GORAB
Genatlas (Paris)GORAB
WikiGenes92344
SOURCE (Princeton)GORAB
Genetics Home Reference (NIH)GORAB
Genomic and cartography
GoldenPath hg38 (UCSC)GORAB  -     chr1:170532122-170553833 +  1q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GORAB  -     1q24.2   [Description]    (hg19-Feb_2009)
GoldenPathGORAB - 1q24.2 [CytoView hg19]  GORAB - 1q24.2 [CytoView hg38]
ImmunoBaseENSG00000120370
Mapping of homologs : NCBIGORAB [Mapview hg19]  GORAB [Mapview hg38]
OMIM231070   607983   
Gene and transcription
Genbank (Entrez)AF143889 AK021814 AK057661 AK308339 BC035999
RefSeq transcript (Entrez)NM_001146039 NM_001320252 NM_152281
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GORAB
Cluster EST : UnigeneHs.183702 [ NCBI ]
CGAP (NCI)Hs.183702
Alternative Splicing GalleryENSG00000120370
Gene ExpressionGORAB [ NCBI-GEO ]   GORAB [ EBI - ARRAY_EXPRESS ]   GORAB [ SEEK ]   GORAB [ MEM ]
Gene Expression Viewer (FireBrowse)GORAB [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)92344
GTEX Portal (Tissue expression)GORAB
Human Protein AtlasENSG00000120370-GORAB [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T7V8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T7V8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T7V8
Splice isoforms : SwissVarQ5T7V8
PhosPhoSitePlusQ5T7V8
Domains : Interpro (EBI)GORAB   
Domain families : Pfam (Sanger)Transcrip_act (PF04949)   
Domain families : Pfam (NCBI)pfam04949   
Conserved Domain (NCBI)GORAB
DMDM Disease mutations92344
Blocks (Seattle)GORAB
SuperfamilyQ5T7V8
Human Protein Atlas [tissue]ENSG00000120370-GORAB [tissue]
Peptide AtlasQ5T7V8
HPRD12144
IPIIPI00029521   IPI00647413   IPI00791549   IPI00795544   
Protein Interaction databases
DIP (DOE-UCLA)Q5T7V8
IntAct (EBI)Q5T7V8
FunCoupENSG00000120370
BioGRIDGORAB
STRING (EMBL)GORAB
ZODIACGORAB
Ontologies - Pathways
QuickGOQ5T7V8
Ontology : AmiGOprotein binding  nucleus  nucleoplasm  nucleolus  cytoplasm  Golgi apparatus  cytosol  hair follicle morphogenesis  positive regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning  non-motile cilium assembly  non-motile cilium assembly  
Ontology : EGO-EBIprotein binding  nucleus  nucleoplasm  nucleolus  cytoplasm  Golgi apparatus  cytosol  hair follicle morphogenesis  positive regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning  non-motile cilium assembly  non-motile cilium assembly  
NDEx NetworkGORAB
Atlas of Cancer Signalling NetworkGORAB
Wikipedia pathwaysGORAB
Orthology - Evolution
OrthoDB92344
GeneTree (enSembl)ENSG00000120370
Phylogenetic Trees/Animal Genes : TreeFamGORAB
HOGENOMQ5T7V8
Homologs : HomoloGeneGORAB
Homology/Alignments : Family Browser (UCSC)GORAB
Gene fusions - Rearrangements
Fusion : QuiverGORAB
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGORAB [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GORAB
dbVarGORAB
ClinVarGORAB
1000_GenomesGORAB 
Exome Variant ServerGORAB
ExAC (Exome Aggregation Consortium)ENSG00000120370
GNOMAD BrowserENSG00000120370
Varsome BrowserGORAB
Genetic variants : HAPMAP92344
Genomic Variants (DGV)GORAB [DGVbeta]
DECIPHERGORAB [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGORAB 
Mutations
ICGC Data PortalGORAB 
TCGA Data PortalGORAB 
Broad Tumor PortalGORAB
OASIS PortalGORAB [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGORAB  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DGORAB
Mutations and Diseases : HGMDGORAB
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GORAB
DgiDB (Drug Gene Interaction Database)GORAB
DoCM (Curated mutations)GORAB (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GORAB (select a term)
intoGenGORAB
Cancer3DGORAB(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM231070    607983   
Orphanet1993   
DisGeNETGORAB
MedgenGORAB
Genetic Testing Registry GORAB
NextProtQ5T7V8 [Medical]
TSGene92344
GENETestsGORAB
Target ValidationGORAB
Huge Navigator GORAB [HugePedia]
snp3D : Map Gene to Disease92344
BioCentury BCIQGORAB
ClinGenGORAB
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD92344
Chemical/Pharm GKB GenePA164720285
Clinical trialGORAB
Miscellaneous
canSAR (ICR)GORAB (select the gene name)
DataMed IndexGORAB
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGORAB
EVEXGORAB
GoPubMedGORAB
iHOPGORAB
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Nov 13 17:45:20 CET 2019
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