Atlas of Genetics and Cytogenetics in Oncology and Haematology


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GPC3-AS1 (GPC3 antisense RNA 1)

Identity

Alias (NCBI)-
HGNC (Hugo) GPC3-AS1
LocusID (NCBI) 110806308
Atlas_Id 79950
Location Xq26.2  [Link to chromosome band Xq26]
Location_base_pair Starts at 133897443 and ends at 133897921 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)GPC3-AS1   52897
Cards
Entrez_Gene (NCBI)GPC3-AS1  110806308  GPC3 antisense RNA 1
Aliases
GeneCards (Weizmann)GPC3-AS1
Ensembl hg19 (Hinxton)ENSG00000286096 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000286096 [Gene_View]  ENSG00000286096 [Sequence]  chrX:133897443-133897921 [Contig_View]  GPC3-AS1 [Vega]
ICGC DataPortalENSG00000286096
TCGA cBioPortalGPC3-AS1
AceView (NCBI)GPC3-AS1
Genatlas (Paris)GPC3-AS1
WikiGenes110806308
SOURCE (Princeton)GPC3-AS1
Genetics Home Reference (NIH)GPC3-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)GPC3-AS1  -     chrX:133897443-133897921 +  Xq26.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GPC3-AS1  -     Xq26.2   [Description]    (hg19-Feb_2009)
GoldenPathGPC3-AS1 - Xq26.2 [CytoView hg19]  GPC3-AS1 - Xq26.2 [CytoView hg38]
ImmunoBaseENSG00000286096
genome Data Viewer NCBIGPC3-AS1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AF085935
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GPC3-AS1
Alternative Splicing GalleryENSG00000286096
Gene ExpressionGPC3-AS1 [ NCBI-GEO ]   GPC3-AS1 [ EBI - ARRAY_EXPRESS ]   GPC3-AS1 [ SEEK ]   GPC3-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)GPC3-AS1 [ Firebrowse - Broad ]
GenevisibleExpression of GPC3-AS1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)110806308
GTEX Portal (Tissue expression)GPC3-AS1
Human Protein AtlasENSG00000286096-GPC3-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)GPC3-AS1
DMDM Disease mutations110806308
Blocks (Seattle)GPC3-AS1
Human Protein Atlas [tissue]ENSG00000286096-GPC3-AS1 [tissue]
Protein Interaction databases
FunCoupENSG00000286096
BioGRIDGPC3-AS1
STRING (EMBL)GPC3-AS1
ZODIACGPC3-AS1
Ontologies - Pathways
Huge Navigator GPC3-AS1 [HugePedia]
snp3D : Map Gene to Disease110806308
BioCentury BCIQGPC3-AS1
ClinGenGPC3-AS1
Clinical trials, drugs, therapy
Protein Interactions : CTD110806308
Clinical trialGPC3-AS1
Miscellaneous
canSAR (ICR)GPC3-AS1 (select the gene name)
HarmonizomeGPC3-AS1
DataMed IndexGPC3-AS1
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGPC3-AS1
EVEXGPC3-AS1
GoPubMedGPC3-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jul 16 15:57:20 CEST 2020

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