Atlas of Genetics and Cytogenetics in Oncology and Haematology

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GPS1 (G protein pathway suppressor 1)

Identity

Other namesCOPS1
CSN1
HGNC (Hugo) GPS1
LocusID (NCBI) 2873
Location 17q25.3
Location_base_pair Starts at 80009763 and ends at 80015346 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)GPS1   4549
Entrez_Gene (NCBI)GPS1  2873  G protein pathway suppressor 1
Cards
GeneCards (Weizmann)GPS1
Ensembl (Hinxton)ENSG00000169727 [Gene_View]  chr17:80009763-80015346 [Contig_View]  GPS1 [Vega]
AceView (NCBI)GPS1
Genatlas (Paris)GPS1
SOURCE (Stanford)NM_004127 NM_212492
Genomic and cartography
GoldenPath (UCSC)GPS1  -  17q25.3   chr17:80009763-80015346 +  17q25.3   [Description]    (hg19-Feb_2009)
EnsemblGPS1 - 17q25.3 [CytoView]
Mapping of homologs : NCBIGPS1 [Mapview]
OMIM601934   
Gene and transcription
Genbank (Entrez)AB209596 AK026610 AK093283 AK222508 AK225248
RefSeq transcript (SRS)NM_004127 NM_212492
RefSeq transcript (Entrez)NM_004127 NM_212492
RefSeq genomic (SRS)AC_000149 NC_000017 NC_018928 NT_010663 NW_001838459 NW_004078093
RefSeq genomic (Entrez)AC_000149 NC_000017 NC_018928 NT_010663 NW_001838459 NW_004078093
Consensus coding sequences : CCDS (NCBI)GPS1
Cluster EST : UnigeneHs.268530 [ SRS ] Hs.268530 [ NCBI ]
CGAP (NCI)Hs.268530
Alternative Splicing : Fast-db (Paris)GSHG0012914
Alternative Splicing GalleryENSG00000169727
Gene ExpressionGPS1 [ NCBI-GEO ]   GPS1 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13098 (SRS) Q13098 (Uniprot)
NextProtQ13098
With graphics : InterProQ13098
Splice isoforms : SwissVarQ13098(Swissvar)
Domains : Interpro (SRS)26S_proteasome_reg_su-Rpn7    PCI_dom    TPR-like_helical    WHTH_trsnscrt_rep_DNA-bd   
Domains : Interpro (EBI)26S_proteasome_reg_su-Rpn7    PCI_dom    TPR-like_helical    WHTH_trsnscrt_rep_DNA-bd   
Related proteins : CluSTrQ13098
Domain families : Pfam (SRS)PCI (PF01399)    RPN7 (PF10602)   
Domain families : Pfam (Sanger)PCI (PF01399)    RPN7 (PF10602)   
Domain families : Pfam (NCBI)pfam01399    pfam10602   
Domain families : Smart (EMBL)PINT (SM00088)  
DMDM2873
Blocks (Seattle)Q13098
Human Protein AtlasENSG00000169727
HPRD15991
IPIIPI00156282   IPI00921488   IPI00414289   IPI00300386   IPI00556522   
Protein Interaction databases
DIP (DOE-UCLA)Q13098
IntAct (EBI)Q13098
FunCoupENSG00000169727
REACTOMEGPS1
Protein Interaction Database2873
BioGRIDGPS1
InParanoidQ13098
Interologous Interaction database Q13098
IntegromeDBGPS1
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)GPS1
SNP (GeneSNP Utah)GPS1
SNP : HGBaseGPS1
Genetic variants : HAPMAPGPS1
Somatic Mutations in Cancer : COSMICGPS1 
CONAN: Copy Number AnalysisGPS1 
Mutations and Diseases : HGMDGPS1
OMIM601934   
GENETests601934   
Disease Genetic AssociationGPS1
Huge Navigator GPS1 [HugePedia]  GPS1 [HugeCancerGEM]
Genomic VariantsGPS1  GPS1 [DGVbeta]
snp3D : Map Gene to Disease2873
General knowledge
Homologs : HomoloGeneGPS1
Homology/Alignments : Family Browser (UCSC)GPS1
Phylogenetic Trees/Animal Genes : TreeFamGPS1
Chemical/Protein Interactions : CTD2873
Chemical/Pharm GKB GenePA28944
Clinical trialGPS1
Cancer Resource (Charite)ENSG00000169727
Ontology : AmiGOinactivation of MAPK activity  GTPase inhibitor activity  cytoplasm  cell cycle  JNK cascade  signalosome  cullin deneddylation  
Ontology : EGO-EBIinactivation of MAPK activity  GTPase inhibitor activity  cytoplasm  cell cycle  JNK cascade  signalosome  cullin deneddylation  
Other databases
Probes
Litterature
PubMed51 Pubmed reference(s) in Entrez
PubGeneGPS1
iHOPGPS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:46:59 CEST 2013
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