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GPS1 (G protein pathway suppressor 1)

Identity

Other namesCOPS1
CSN1
HGNC (Hugo) GPS1
LocusID (NCBI) 2873
Location 17q25.3
Location_base_pair Starts at 80009763 and ends at 80015346 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)GPS1   4549
Cards
Entrez_Gene (NCBI)GPS1  2873  G protein pathway suppressor 1
GeneCards (Weizmann)GPS1
Ensembl hg19 (Hinxton)ENSG00000169727 [Gene_View]  chr17:80009763-80015346 [Contig_View]  GPS1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000169727 [Gene_View]  chr17:80009763-80015346 [Contig_View]  GPS1 [Vega]
ICGC DataPortalENSG00000169727
cBioPortalGPS1
AceView (NCBI)GPS1
Genatlas (Paris)GPS1
WikiGenes2873
SOURCE (Princeton)GPS1
Genomic and cartography
GoldenPath hg19 (UCSC)GPS1  -     chr17:80009763-80015346 +  17q25.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GPS1  -     17q25.3   [Description]    (hg38-Dec_2013)
EnsemblGPS1 - 17q25.3 [CytoView hg19]  GPS1 - 17q25.3 [CytoView hg38]
Mapping of homologs : NCBIGPS1 [Mapview hg19]  GPS1 [Mapview hg38]
OMIM601934   
Gene and transcription
Genbank (Entrez)AB209596 AK026610 AK093283 AK222508 AK225248
RefSeq transcript (Entrez)NM_004127 NM_212492
RefSeq genomic (Entrez)AC_000149 NC_000017 NC_018928 NT_010663 NW_001838459 NW_004929408
Consensus coding sequences : CCDS (NCBI)GPS1
Cluster EST : UnigeneHs.268530 [ NCBI ]
CGAP (NCI)Hs.268530
Alternative Splicing : Fast-db (Paris)GSHG0012914
Alternative Splicing GalleryENSG00000169727
Gene ExpressionGPS1 [ NCBI-GEO ]     GPS1 [ SEEK ]   GPS1 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13098 (Uniprot)
NextProtQ13098  [Medical]
With graphics : InterProQ13098
Splice isoforms : SwissVarQ13098 (Swissvar)
Domains : Interpro (EBI)26S_proteasome_reg_su-Rpn7    PCI_dom    TPR-like_helical    WHTH_DNA-bd_dom   
Related proteins : CluSTrQ13098
Domain families : Pfam (Sanger)PCI (PF01399)    RPN7 (PF10602)   
Domain families : Pfam (NCBI)pfam01399    pfam10602   
Domain families : Smart (EMBL)PINT (SM00088)  
DMDM Disease mutations2873
Blocks (Seattle)Q13098
Human Protein AtlasENSG00000169727
Peptide AtlasQ13098
HPRD15991
IPIIPI00156282   IPI00921488   IPI00414289   IPI00300386   IPI00556522   
Protein Interaction databases
DIP (DOE-UCLA)Q13098
IntAct (EBI)Q13098
FunCoupENSG00000169727
BioGRIDGPS1
IntegromeDBGPS1
STRING (EMBL)GPS1
Ontologies - Pathways
QuickGOQ13098
Ontology : AmiGOinactivation of MAPK activity  GTPase inhibitor activity  protein binding  nucleus  cytoplasm  cell cycle  JNK cascade  COP9 signalosome  cullin deneddylation  
Ontology : EGO-EBIinactivation of MAPK activity  GTPase inhibitor activity  protein binding  nucleus  cytoplasm  cell cycle  JNK cascade  COP9 signalosome  cullin deneddylation  
Protein Interaction DatabaseGPS1
DoCM (Curated mutations)GPS1
Wikipedia pathwaysGPS1
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerGPS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GPS1
dbVarGPS1
ClinVarGPS1
1000_GenomesGPS1 
Exome Variant ServerGPS1
SNP (GeneSNP Utah)GPS1
SNP : HGBaseGPS1
Genetic variants : HAPMAPGPS1
Genomic VariantsGPS1  GPS1 [DGVbeta]
Mutations
ICGC Data PortalENSG00000169727 
Somatic Mutations in Cancer : COSMICGPS1 
CONAN: Copy Number AnalysisGPS1 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)17:80009763-80015346
Mutations and Diseases : HGMDGPS1
OMIM601934   
MedgenGPS1
NextProtQ13098 [Medical]
GENETestsGPS1
Disease Genetic AssociationGPS1
Huge Navigator GPS1 [HugePedia]  GPS1 [HugeCancerGEM]
snp3D : Map Gene to Disease2873
DGIdb (Drug Gene Interaction db)GPS1
General knowledge
Homologs : HomoloGeneGPS1
Homology/Alignments : Family Browser (UCSC)GPS1
Phylogenetic Trees/Animal Genes : TreeFamGPS1
Chemical/Protein Interactions : CTD2873
Chemical/Pharm GKB GenePA28944
Clinical trialGPS1
Cancer Resource (Charite)ENSG00000169727
Other databases
Probes
Litterature
PubMed63 Pubmed reference(s) in Entrez
CoreMineGPS1
GoPubMedGPS1
iHOPGPS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2014Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Dec 20 21:52:28 CET 2014

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