Atlas of Genetics and Cytogenetics in Oncology and Haematology


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GPSM2 (G-protein signaling modulator 2)

Identity

Other namesCMCS
DFNB82
LGN
PINS
HGNC (Hugo) GPSM2
LocusID (NCBI) 29899
Location 1p13.3
Location_base_pair Starts at 109419603 and ends at 109473044 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)GPSM2   29501
Cards
Entrez_Gene (NCBI)GPSM2  29899  G-protein signaling modulator 2
GeneCards (Weizmann)GPSM2
Ensembl (Hinxton)ENSG00000121957 [Gene_View]  chr1:109419603-109473044 [Contig_View]  GPSM2 [Vega]
ICGC DataPortalENSG00000121957
cBioPortalGPSM2
AceView (NCBI)GPSM2
Genatlas (Paris)GPSM2
WikiGenes29899
SOURCE (Princeton)NM_013296
Genomic and cartography
GoldenPath (UCSC)GPSM2  -  1p13.3   chr1:109419603-109473044 +  1p13.3   [Description]    (hg19-Feb_2009)
EnsemblGPSM2 - 1p13.3 [CytoView]
Mapping of homologs : NCBIGPSM2 [Mapview]
OMIM604213   609245   
Gene and transcription
Genbank (Entrez)AB445462 AI224972 AK295563 AK314249 AY136740
RefSeq transcript (Entrez)NM_013296
RefSeq genomic (Entrez)AC_000133 NC_000001 NC_018912 NG_028108 NT_032977 NW_001838594 NW_004929290
Consensus coding sequences : CCDS (NCBI)GPSM2
Cluster EST : UnigeneHs.658489 [ NCBI ]
CGAP (NCI)Hs.658489
Alternative Splicing : Fast-db (Paris)GSHG0000764
Alternative Splicing GalleryENSG00000121957
Gene ExpressionGPSM2 [ NCBI-GEO ]     GPSM2 [ SEEK ]   GPSM2 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP81274 (Uniprot)
NextProtP81274  [Medical]
With graphics : InterProP81274
Splice isoforms : SwissVarP81274 (Swissvar)
Domaine pattern : Prosite (Expaxy)GOLOCO (PS50877)    TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (EBI)GoLoco_motif [organisation]   TPR-contain_dom [organisation]   TPR-like_helical [organisation]   TPR_1 [organisation]   TPR_repeat [organisation]  
Related proteins : CluSTrP81274
Domain families : Pfam (Sanger)GoLoco (PF02188)    TPR_1 (PF00515)    TPR_7 (PF13176)   
Domain families : Pfam (NCBI)pfam02188    pfam00515    pfam13176   
Domain families : Smart (EMBL)GoLoco (SM00390)  TPR (SM00028)  
DMDM Disease mutations29899
Blocks (Seattle)P81274
PDB (SRS)3SF4   
PDB (PDBSum)3SF4   
PDB (IMB)3SF4   
PDB (RSDB)3SF4   
Human Protein AtlasENSG00000121957 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasP81274
HPRD06609
IPIIPI00642575   IPI00889631   IPI00883886   IPI00893157   IPI00893765   
Protein Interaction databases
DIP (DOE-UCLA)P81274
IntAct (EBI)P81274
FunCoupENSG00000121957
BioGRIDGPSM2
InParanoidP81274
Interologous Interaction database P81274
IntegromeDBGPSM2
STRING (EMBL)GPSM2
Ontologies - Pathways
Ontology : AmiGOestablishment of mitotic spindle orientation  protein binding  nucleus  nucleolus  cytoplasm  cell cortex  G-protein coupled receptor signaling pathway  GTPase regulator activity  identical protein binding  apical part of cell  regulation of catalytic activity  lung epithelial cell differentiation  
Ontology : EGO-EBIestablishment of mitotic spindle orientation  protein binding  nucleus  nucleolus  cytoplasm  cell cortex  G-protein coupled receptor signaling pathway  GTPase regulator activity  identical protein binding  apical part of cell  regulation of catalytic activity  lung epithelial cell differentiation  
Protein Interaction DatabaseGPSM2
Wikipedia pathwaysGPSM2
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)GPSM2
snp3D : Map Gene to Disease29899
SNP (GeneSNP Utah)GPSM2
SNP : HGBaseGPSM2
Genetic variants : HAPMAPGPSM2
Exome VariantGPSM2
1000_GenomesGPSM2 
ICGC programENSG00000121957 
Somatic Mutations in Cancer : COSMICGPSM2 
CONAN: Copy Number AnalysisGPSM2 
Mutations and Diseases : HGMDGPSM2
Mutations and Diseases : intOGenGPSM2
Genomic VariantsGPSM2  GPSM2 [DGVbeta]
dbVarGPSM2
ClinVarGPSM2
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM604213    609245   
MedgenGPSM2
GENETestsGPSM2
Disease Genetic AssociationGPSM2
Huge Navigator GPSM2 [HugePedia]  GPSM2 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneGPSM2
Homology/Alignments : Family Browser (UCSC)GPSM2
Phylogenetic Trees/Animal Genes : TreeFamGPSM2
Chemical/Protein Interactions : CTD29899
Chemical/Pharm GKB GenePA134993615
Clinical trialGPSM2
Cancer Resource (Charite)ENSG00000121957
Other databases
Probes
Litterature
PubMed35 Pubmed reference(s) in Entrez
CoreMineGPSM2
iHOPGPSM2
OncoSearchGPSM2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 26 16:48:37 CEST 2014

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