Atlas of Genetics and Cytogenetics in Oncology and Haematology

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GPSM3 (G protein signaling modulator 3)

Identity

Alias_namesC6orf9
chromosome 6 open reading frame 9
G-protein signalling modulator 3 (AGS3-like, C. elegans)
Alias_symbol (synonym)NG1
G18
G18.1a
G18.1b
G18.2
AGS4
Other alias
HGNC (Hugo) GPSM3
LocusID (NCBI) 63940
Atlas_Id 64022
Location 6p21.32  [Link to chromosome band 6p21]
Location_base_pair Starts at 32190766 and ends at 32192915 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)GPSM3   13945
Cards
Entrez_Gene (NCBI)GPSM3  63940  G protein signaling modulator 3
AliasesAGS4; C6orf9; G18; G18.1a; 
G18.1b; G18.2; NG1
GeneCards (Weizmann)GPSM3
Ensembl hg19 (Hinxton)ENSG00000213654 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000213654 [Gene_View]  ENSG00000213654 [Sequence]  chr6:32190766-32192915 [Contig_View]  GPSM3 [Vega]
ICGC DataPortalENSG00000213654
TCGA cBioPortalGPSM3
AceView (NCBI)GPSM3
Genatlas (Paris)GPSM3
WikiGenes63940
SOURCE (Princeton)GPSM3
Genetics Home Reference (NIH)GPSM3
Genomic and cartography
GoldenPath hg38 (UCSC)GPSM3  -     chr6:32190766-32192915 -  6p21.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GPSM3  -     6p21.32   [Description]    (hg19-Feb_2009)
GoldenPathGPSM3 - 6p21.32 [CytoView hg19]  GPSM3 - 6p21.32 [CytoView hg38]
ImmunoBaseENSG00000213654
Mapping of homologs : NCBIGPSM3 [Mapview hg19]  GPSM3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF155657 AJ243937 AJ243937 AJ243938 AK313922
RefSeq transcript (Entrez)NM_001276501 NM_022107
RefSeq genomic (Entrez)NC_000006 NT_113891 NT_167244 NT_167246 NT_167247 NT_167248 NT_167249
Consensus coding sequences : CCDS (NCBI)GPSM3
Cluster EST : UnigeneHs.520046 [ NCBI ]
CGAP (NCI)Hs.520046
Alternative Splicing GalleryENSG00000213654
Gene ExpressionGPSM3 [ NCBI-GEO ]   GPSM3 [ EBI - ARRAY_EXPRESS ]   GPSM3 [ SEEK ]   GPSM3 [ MEM ]
Gene Expression Viewer (FireBrowse)GPSM3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)63940
GTEX Portal (Tissue expression)GPSM3
Human Protein AtlasENSG00000213654-GPSM3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y4H4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y4H4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y4H4
Splice isoforms : SwissVarQ9Y4H4
PhosPhoSitePlusQ9Y4H4
Domaine pattern : Prosite (Expaxy)GOLOCO (PS50877)   
Domains : Interpro (EBI)GoLoco_motif    TPR-like_helical_dom_sf   
Domain families : Pfam (Sanger)GoLoco (PF02188)   
Domain families : Pfam (NCBI)pfam02188   
Domain families : Smart (EMBL)GoLoco (SM00390)  
Conserved Domain (NCBI)GPSM3
DMDM Disease mutations63940
Blocks (Seattle)GPSM3
SuperfamilyQ9Y4H4
Human Protein Atlas [tissue]ENSG00000213654-GPSM3 [tissue]
Peptide AtlasQ9Y4H4
HPRD13605
IPIIPI00005064   IPI00646534   IPI00383716   IPI00647054   IPI00982400   IPI00978271   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y4H4
IntAct (EBI)Q9Y4H4
FunCoupENSG00000213654
BioGRIDGPSM3
STRING (EMBL)GPSM3
ZODIACGPSM3
Ontologies - Pathways
QuickGOQ9Y4H4
Ontology : AmiGOpositive regulation of leukocyte chemotaxis  molecular_function  protein binding  cellular_component  cytoplasm  plasma membrane  biological_process  GTPase regulator activity  positive regulation of inflammatory response  regulation of catalytic activity  positive regulation of cytokine production involved in inflammatory response  
Ontology : EGO-EBIpositive regulation of leukocyte chemotaxis  molecular_function  protein binding  cellular_component  cytoplasm  plasma membrane  biological_process  GTPase regulator activity  positive regulation of inflammatory response  regulation of catalytic activity  positive regulation of cytokine production involved in inflammatory response  
NDEx NetworkGPSM3
Atlas of Cancer Signalling NetworkGPSM3
Wikipedia pathwaysGPSM3
Orthology - Evolution
OrthoDB63940
GeneTree (enSembl)ENSG00000213654
Phylogenetic Trees/Animal Genes : TreeFamGPSM3
HOGENOMQ9Y4H4
Homologs : HomoloGeneGPSM3
Homology/Alignments : Family Browser (UCSC)GPSM3
Gene fusions - Rearrangements
Fusion : QuiverGPSM3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGPSM3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GPSM3
dbVarGPSM3
ClinVarGPSM3
1000_GenomesGPSM3 
Exome Variant ServerGPSM3
ExAC (Exome Aggregation Consortium)ENSG00000213654
GNOMAD BrowserENSG00000213654
Varsome BrowserGPSM3
Genetic variants : HAPMAP63940
Genomic Variants (DGV)GPSM3 [DGVbeta]
DECIPHERGPSM3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGPSM3 
Mutations
ICGC Data PortalGPSM3 
TCGA Data PortalGPSM3 
Broad Tumor PortalGPSM3
OASIS PortalGPSM3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGPSM3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DGPSM3
Mutations and Diseases : HGMDGPSM3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GPSM3
DgiDB (Drug Gene Interaction Database)GPSM3
DoCM (Curated mutations)GPSM3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GPSM3 (select a term)
intoGenGPSM3
Cancer3DGPSM3(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETGPSM3
MedgenGPSM3
Genetic Testing Registry GPSM3
NextProtQ9Y4H4 [Medical]
TSGene63940
GENETestsGPSM3
Target ValidationGPSM3
Huge Navigator GPSM3 [HugePedia]
snp3D : Map Gene to Disease63940
BioCentury BCIQGPSM3
ClinGenGPSM3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD63940
Chemical/Pharm GKB GenePA25940
Clinical trialGPSM3
Miscellaneous
canSAR (ICR)GPSM3 (select the gene name)
DataMed IndexGPSM3
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGPSM3
EVEXGPSM3
GoPubMedGPSM3
iHOPGPSM3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 15:30:17 CEST 2019
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